Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018172.1 Corchorus olitorius cultivar O-4 contig18205, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 18854
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.31


Found at i:18847 original size:18 final size:18

Alignment explanation


    Indices: 18792--18847  Score: 58
    Period size: 18  Copynumber: 3.1  Consensus size: 18

      18782 TCCTCCCGCT

                 *           *
      18792 CCAGCTCCACCACCAACT
          1 CCAGCACCACCACCAACA

                    *  *   *  
      18810 CCAGCACCGCCTCCACCA
          1 CCAGCACCACCACCAACA

                       *      
      18828 CCAGCACCACCCCCAACA
          1 CCAGCACCACCACCAACA

              
      18846 CC
          1 CC

      18848 TCCTCCT


Statistics
Matches: 30,  Mismatches: 8, Indels: 0
        0.79            0.21        0.00

Matches are distributed among these distances:
  18   30  1.00

ACGTcount: A:0.27, C:0.61, G:0.07, T:0.05


Consensus pattern (18 bp):   
CCAGCACCACCACCAACA
Done.