genome.fa.s18173.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018173.1 Corchorus olitorius cultivar O-4 contig18206, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  175804

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13--125	24	4.5	24	71	12	91	24	60	2	12	1.45
15--101	15	5.8	15	73	0	66	21	60	3	13	1.48
91--121	12	2.6	12	89	0	53	29	61	0	9	1.28
27--113	27	3.2	27	77	6	113	19	60	3	16	1.49
17--121	54	1.9	54	90	0	165	23	60	2	13	1.47
91--136	24	1.9	24	81	0	56	28	56	2	13	1.48
162--298	36	3.6	36	75	15	118	22	59	3	14	1.51
162--257	42	2.3	42	78	8	106	25	56	5	13	1.58
163--432	36	7.2	36	69	10	105	22	58	5	14	1.55
241--334	24	3.9	24	75	0	80	23	60	3	12	1.47
300--346	24	2.0	24	82	0	58	27	59	4	8	1.45
261--364	42	2.5	42	80	0	109	22	60	3	13	1.49
318--412	18	5.3	18	68	5	57	20	57	7	14	1.61
406--462	30	1.9	30	85	0	78	19	61	5	14	1.51
1892--1919	14	2.0	14	100	0	56	57	14	7	21	1.61
21730--21888	87	1.8	87	100	0	318	30	17	19	32	1.95
38252--38291	21	1.9	21	90	10	64	27	55	2	15	1.53
42905--42930	13	2.0	13	100	0	52	61	0	0	38	0.96
48689--48733	23	2.0	23	86	8	65	26	4	13	55	1.57
86211--86255	22	2.0	22	82	4	54	28	13	0	57	1.36
87039--87067	14	2.0	15	93	6	51	34	37	6	20	1.80
87265--87289	12	2.1	12	100	0	50	52	16	8	24	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109893--110043	63	2.5	61	83	9	175	29	15	23	32	1.95
109928--110396	237	2.0	234	88	2	699	24	14	24	36	1.93
113478--113558	29	2.8	29	100	0	162	27	17	12	43	1.84
116403--116456	28	1.9	28	88	0	81	22	35	7	35	1.82
126446--126606	80	2.0	80	100	0	322	33	9	13	42	1.78
139627--139651	13	1.9	13	100	0	50	80	20	0	0	0.72
141015--141077	28	2.2	29	85	2	83	20	23	12	42	1.86
141129--141167	20	1.9	20	89	5	60	51	15	12	20	1.76
144115--144174	31	1.9	31	96	0	111	43	28	5	23	1.74
144827--144863	2	18.5	2	100	0	74	48	0	0	51	1.00
145153--145235	3	27.7	3	100	0	166	33	0	0	66	0.92
145466--145510	17	2.5	19	82	7	58	46	0	0	53	1.00
146056--146096	14	2.9	15	85	7	50	82	0	14	2	0.76
159719--159755	4	9.2	4	100	0	74	0	27	0	72	0.84
161988--162034	12	4.2	12	84	15	66	46	12	0	40	1.42
164839--164904	33	2.0	33	96	0	123	33	19	9	37	1.84
169348--169380	17	2.0	17	88	5	50	24	12	18	45	1.83
172593--175801	336	9.7	333	85	4	3791	32	14	15	36	1.89
172593--175801	671	4.8	664	84	4	3823	32	14	15	36	1.89

Tables:   1

The End!