Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018176.1 Corchorus olitorius cultivar O-4 contig18209, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71973

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2--1477
334
4.5
333
83
3
1757
33
14
15
36
1.88
3027--3107
42
1.9
42
82
5
101
19
29
14
35
1.92
3099--3168
15
4.6
15
81
10
79
25
22
30
21
1.99
5157--5489
179
1.8
181
97
1
634
32
21
16
29
1.95
29163--29211
21
2.3
20
80
10
53
55
4
8
32
1.48
30370--30401
4
8.0
4
100
0
64
25
0
0
75
0.81
48204--48312
48
2.3
48
88
6
184
25
13
11
48
1.77
64613--64658
22
2.0
23
83
12
58
50
4
4
41
1.42
65372--65398
4
6.8
4
100
0
54
0
22
0
77
0.76
65986--66049
21
3.1
21
80
8
78
35
12
18
32
1.89
67775--67832
19
2.9
20
82
5
73
36
12
20
31
1.89
68149--68189
14
2.8
15
72
20
50
56
4
4
34
1.42

Tables:   1

The End!