Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01018178.1 Corchorus olitorius cultivar O-4 contig18211, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 53465
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.33
Found at i:17458 original size:32 final size:32
Alignment explanation
Indices: 17413--17479 Score: 82
Period size: 35 Copynumber: 2.0 Consensus size: 32
17403 TCCCATCCTC
17413 TTTTTGTATAGAATCAT-GTAGTAGTTGTAAT
1 TTTTTGTATAGAATCATAGTAGTAGTTGTAAT
* *
17444 TTTTTTTATGAGAATTATAAAGTAGTAGTTGTAAT
1 TTTTTGTAT-AGAATCAT--AGTAGTAGTTGTAAT
17479 T
1 T
17480 AATAATATGG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
31 8 0.27
32 7 0.23
35 15 0.50
ACGTcount: A:0.31, C:0.01, G:0.18, T:0.49
Consensus pattern (32 bp):
TTTTTGTATAGAATCATAGTAGTAGTTGTAAT
Found at i:30506 original size:11 final size:11
Alignment explanation
Indices: 30482--30516 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
30472 TTGACAGCGC
30482 AACAAAAACAA
1 AACAAAAACAA
* *
30493 AACGAAAACGA
1 AACAAAAACAA
30504 AACAAAAACAA
1 AACAAAAACAA
30515 AA
1 AA
30517 AACAGAAAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.77, C:0.17, G:0.06, T:0.00
Consensus pattern (11 bp):
AACAAAAACAA
Found at i:37659 original size:1 final size:1
Alignment explanation
Indices: 37655--37683 Score: 58
Period size: 1 Copynumber: 29.0 Consensus size: 1
37645 TTCTTCTTTC
37655 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT
37684 GTGCGTGGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:45105 original size:24 final size:24
Alignment explanation
Indices: 45070--45151 Score: 155
Period size: 24 Copynumber: 3.4 Consensus size: 24
45060 CGAGCCGAGC
*
45070 TCGAGCTTGATAATCAAAGCTCGA
1 TCGAGCTCGATAATCAAAGCTCGA
45094 TCGAGCTCGATAATCAAAGCTCGA
1 TCGAGCTCGATAATCAAAGCTCGA
45118 TCGAGCTCGATAATCAAAGCTCGA
1 TCGAGCTCGATAATCAAAGCTCGA
45142 TCGAGCTCGA
1 TCGAGCTCGA
45152 GTCGAGTAGC
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 57 1.00
ACGTcount: A:0.32, C:0.24, G:0.22, T:0.22
Consensus pattern (24 bp):
TCGAGCTCGATAATCAAAGCTCGA
Found at i:45116 original size:14 final size:14
Alignment explanation
Indices: 45073--45142 Score: 57
Period size: 14 Copynumber: 5.6 Consensus size: 14
45063 GCCGAGCTCG
*
45073 AGCTTGATAATCAA
1 AGCTCGATAATCAA
*
45087 AGCTCG---ATC-G
1 AGCTCGATAATCAA
45097 AGCTCGATAATCAA
1 AGCTCGATAATCAA
*
45111 AGCTCG---ATC-G
1 AGCTCGATAATCAA
45121 AGCTCGATAATCAA
1 AGCTCGATAATCAA
45135 AGCTCGAT
1 AGCTCGAT
45143 CGAGCTCGAG
Statistics
Matches: 43, Mismatches: 5, Indels: 16
0.67 0.08 0.25
Matches are distributed among these distances:
10 12 0.28
11 6 0.14
13 6 0.14
14 19 0.44
ACGTcount: A:0.34, C:0.23, G:0.20, T:0.23
Consensus pattern (14 bp):
AGCTCGATAATCAA
Found at i:46111 original size:325 final size:323
Alignment explanation
Indices: 45479--49314 Score: 2125
Period size: 325 Copynumber: 11.6 Consensus size: 323
45469 CGAAATCGTG
* * * *
45479 TTGTTTTGATTTAATTAGAAATTAATTCGGAAGATAAATGGAAAAACGATATTAGAAGCGTGAAA
1 TTGTTTCGATTTAATTAGAAATAAATTCGGAAAAAAAATGGAAAAACGATATTAGAAGCGTGAAA
* * *
45544 AAACCTTCAATATTTTTGTCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAATTTGA-G
66 AACCCTTCAAT-TTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGG
* ** * *
45608 -AAAAATTTCTT-CG-T-G--TCAGTTTTTAGCCGAAATCGTGTACTAACCTTCACCGTTTTTTT
130 AAAAAATTT-TTGCGTTAGTTTAAAATTTTAGCCGAAATCGTGTACTAACCATCA-CG-----TG
* * * * * *
45667 TTCCTAAAAACGCGTTT-TGGGGCCTCGACTCATTTTTGAATGGTTTTTGGC-ATACAGACTCCT
188 TT-GTAAAAACGC-TTTCCGGGGCCCCGACTCAGTTTTGCATGATTTTTGGCGA-A-AGACTCCT
* * * * *
45730 TAAAATATCTATATTCA-TGTAACCAAATCTCTGCCACACTAGATTTAAGGATTTGTTTTTAGGA
249 TGAAATATCTATATTCATTG-AACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGA
45794 GCATCTGAATC
313 GCATCTGAATC
* *
45805 TCGTTTCGATTTAATTAGAAATAAATTCGGAAAAAAAATGG-AAAACGATATTAGAAGTGTGAAA
1 TTGTTTCGATTTAATTAGAAATAAATTCGGAAAAAAAATGGAAAAACGATATTAGAAGCGTGAAA
* *
45869 AACCCTTCAATTTTTGTGGCATTGAATTTTATATTTTTTCTGAGTATTGTGGC-AAAAATTGAGG
66 AACCCTTCAATTTTT-TGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGG
* *
45933 AAAAATTTTTTGCGTTAGTTTTTGCAAAATTTTAGCCGAAATCATGTACTAACCATCACG-GTT-
130 AAAAAATTTTTGCGTTAG--TTT--AAAATTTTAGCCGAAATCGTGTACTAACCATCACGTGTTG
** * * * * * *
45996 TAAAAACGCTTTCCGAAGACACGTCTCAATTTTGCTTGATTTTTGGCGCAAAGACTCCTCGAAAT
191 TAAAAACGCTTTCCGGGGCCCCGACTCAGTTTTGCATGATTTTTGGCG-AAAGACTCCTTGAAAT
* ** *
46061 ATCTATATTCATTGAACCAAATTTCAGTGACATTGGATATAAGGATTTGTTTTTACGAGCATCTG
255 ATCTATATTCATTGAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCA--T-
46126 AACTGAATC
317 --CTGAATC
* * * * * * *
46135 TTGTTTCGATTTAGTTA-AAATTATTTCGG-AAAACAATGGAAAAACGATATTCGAATCATGAAA
1 TTGTTTCGATTTAATTAGAAATAAATTCGGAAAAAAAATGGAAAAACGATATTAGAAGCGTGAAA
* * * * *
46198 AGCCCGTCAATCTATTCGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTCA-G
66 AACCCTTCAAT-TTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGG
* * * *
46262 AAGAAAA-TTTT-CG--AG--T-AAGTTTTAAGCCAAAATCATGTACTAACCATCACGGTTTTTG
130 AA-AAAATTTTTGCGTTAGTTTAAAATTTT-AGCCGAAATCGTGTACTAACCATCAC-G-TGTT-
* * ** * *
46320 GGTTAAAATCGCGTTAAGGGGCCCCGACTCAGTTTTGCATTATTTTTGGCAGAAAAACTCCTTGA
190 -G-TAAAAACGCTTTCCGGGGCCCCGACTCAGTTTTGCATGATTTTTGGC-GAAAGACTCCTTGA
* * *
46385 AAGATCGATATTCATCT-AACCGAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCA
252 AATATCTATATTCAT-TGAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCA
46449 TCTGAATC
316 TCTGAATC
* *
46457 TTGTTTCGATTTAATAAGAAATAAATTCGG-AAAAAAATGGAAAAATGATATTAGAAGCGTGAAA
1 TTGTTTCGATTTAATTAGAAATAAATTCGGAAAAAAAATGGAAAAACGATATTAGAAGCGTGAAA
* ** * *
46521 AACCCTTCAATTTTTTTTGG-TTTGAATTATATATTTAATCTGAGTATTTTAG-AAAAGAATTGA
66 AACCCTTCAA--TTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAA-AATTGA
* ** * * *
46584 GGAAAAAATTTTCGGGTCAGTTTTTTGTAAAAATTTAGCCGAAACCGTGTATTAACCATCACATG
128 GGAAAAAATTTT--TG-C-GTTAGTT-TAAAATTTTAGCCGAAATCGTGTACTAACCATCAC--G
* * * * * *
46649 TTTTTGGTAAAAATG-TGTTCCGGGGCCCTGACTCAGTTTTGCATAATTTTTGGCATAAAGACTT
186 -TGTT-GTAAAAACGCT-TTCCGGGGCCCCGACTCAGTTTTGCATGATTTTTGGC-GAAAGACTC
* * * *
46713 CTTG-AATATCTATATTCATCGAACCAAATCCCAGCCGCATTGGATTTAAGGATTTGTTTTTACA
247 CTTGAAATATCTATATTCATTGAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACG
*
46777 AGCATCTTAATC
312 AGCATCTGAATC
* * * *
46789 TTGTTTCGATTTAATTCA-AAATTAATTCCGAGAAAAAAAAT-GATAAAATGATATTTGAAGCAT
1 TTGTTTCGATTTAATT-AGAAATAAATT-CG-GAAAAAAAATGGA-AAAACGATATTAGAAGCGT
* * * * * **
46852 GGAAAACTCGTCAATATTTTTGTCGTTGAA-T-TAT-TTTTTCCTGAGTATTGTGAAAAAAAATT
62 GAAAAACCCTTCAAT-TTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATT
** ** * * * * *
46914 -CTGAAAAAATTTTCACGTCAG--T----TTTTAGCCGAAATCGTGAACTAAGCATAACAGTTTT
126 GAGGAAAAAATTTTTGCGTTAGTTTAAAATTTTAGCCGAAATCGTGTACTAACCATCAC-G-TGT
* * **
46972 TGGGCTAAAAACACGTTT-CGGGGCCCCGACTCAGTTTTGCAAGATTTTTGGCAGAAAGACAACT
189 T--G-TAAAAACGC-TTTCCGGGGCCCCGACTCAGTTTTGCATGATTTTTGGC-GAAAGACTCCT
* * **
47036 TGAAATATCGATATGCATCT-AACCAAATCTCAGCCACATTGGATTTAATTATTTGTTTTTACGA
249 TGAAATATCTATATTCAT-TGAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGA
*
47100 GCATCTGAATA
313 GCATCTGAATC
* * *
47111 TTGTTTCGATTTAATTAGAAATAAATTC--AGAAAAAATGGAAAAATGATATTAGAAGCGTTAAA
1 TTGTTTCGATTTAATTAGAAATAAATTCGGAAAAAAAATGGAAAAACGATATTAGAAGCGTGAAA
* * *
47174 AACCCTTCAATTTTTTAGTGTTGAATTATATATTTTTTCTGAGTATTGCGGCAAAAAATTGTA-G
66 AACCCTTCAATTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTG-AGG
* * * ** * * * * **
47238 AAACCCTTCAATCTATTTTGCGTT-GAATTATATATTTTTTCTGAGTATTGTGGTA-AAAAAATC
130 AAA------AA-AT-TTTTGCGTTAG-TTTA-AAATTTTAGCCGA-AATCGT-GTACTAACCATC
* * * *** *** * ** * *
47301 AGAAGAATTCTTTTGGGTAA-G-TTT--TTAG--CCGAAATCATGTACCAT-CACGGTTTTTGGG
183 --ACG---TGTTGT-AAAAACGCTTTCCGGGGCCCCG-ACTCA-GT--TTTGCATGATTTTT-GG
* * * * ***** *** * *** * * ** * * *
47359 CTAAAAACGCGTT-ATGGGGCCCCGACTCAGTT-TTTCATGATTTTTGGCAGA-AGGACTCCTTA
237 CGAAAGACTCCTTGA-AATATCTATATTCA-TTGAACCA-AATCTCAGCCACATTGGA-T--TTA
* * * *
47421 A-AATATCGATATTCATCTAACCGA--ATCTCAAGGAC
296 AGGAT-TTG-T-TT--T-T-A-CGAGCATCTGAA--TC
** ** * * * *** *** * **
47456 ATTGGATATAAGGATTTGTTTTTACGAGTATCTGAATCTTGTTTCGATTTAAT-TAAAAATTA-A
1 -TT-G-T-T-TCGA-TT-TAATTA-GA--A-ATAAAT-TCG--GAAAAAAAATGGAAAAACGATA
* * * *
47519 TTCGAAAAAATG-GAAAAACGATATTAGAAACGTGAAAAACCCTCCAATCTTTATGGCGTTGAAT
52 TT----AGAA-GCG--T-----------------GAAAAACCCTTCAAT-TTTTTGGCGTTGAAT
* * * *
47583 TATATATTTTTTCTAAGTATTGCGGCAAAAAATTGAGGAAAAAATTTTCGGGTTAGTTTTTGCAA
92 TATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGGAAAAAATTTTTGCGTTAG--TTT--AA
* * *
47648 AATTTTA-CCGAAATCGTGTA-TAAACCATCACAGTTTTTAACTAAAAACGCTTTCCGGAGCCCC
153 AATTTTAGCCGAAATCGTGTACT-AACCATCAC-G-TGTT--GTAAAAACGCTTTCCGGGGCCCC
* * ** *
47711 GGCTCAATTTCACATGATTTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCGAACCAAA
213 GACTCAGTTTTGCATGA-TTTTTGGCG-AAAGACTCCTTGAAATATCTATATTCATTGAACCAAA
* * * * *
47776 TTTCAGCCATAGTGGATATACA-GATTTGTTTTTACGAGCATCTAAATC
276 TCTCAGCCACATTGGATTTA-AGGATTTGTTTTTACGAGCATCTGAATC
* * * *
47824 TTGTTTCGATTTAGTTA-AAATTAATTCAG-AAAAAAATGGAAAAACGATATTAGAAGCATGAAA
1 TTGTTTCGATTTAATTAGAAATAAATTCGGAAAAAAAATGGAAAAACGATATTAGAAGCGTGAAA
* * *
47887 AGCCCGTCAATTTATTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTCA-G
66 AACCCTTCAATTT-TTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGG
* * * * * * * *
47951 AAGAAAATTTTT-C---AG-AT-AAGTTGTTAACCAAAATCATGTACTAATCATAACGGTTTTTG
130 AA-AAAATTTTTGCGTTAGTTTAAAATT-TTAGCCGAAATCGTGTACTAACCATCAC-G-TGTT-
* * * *
48010 GGTTAAAAATGCATTACGGGGCCCCGACTCAGTTTGGCATGATTTTTGGCAGAAAGACTCCTTGA
190 -G-TAAAAACGCTTTCCGGGGCCCCGACTCAGTTTTGCATGATTTTTGGC-GAAAGACTCCTTGA
* * * * * *
48075 AATATCAATATTCATCT-AATCGAATTTCAGCCACATTGGATTTAAGGACTTGTTTTTGCGAGCA
252 AATATCTATATTCAT-TGAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCA
*
48139 TCTAAATC
316 TCTGAATC
* * * *
48147 TTGTTTCGATTTAATTAAAAATAAATTTGGGAAAAAAA-GGAAAAACAATATTAGAAGCGTGAAA
1 TTGTTTCGATTTAATTAGAAATAAATTCGGAAAAAAAATGGAAAAACGATATTAGAAGCGTGAAA
* * *
48211 CACCCTTCAATATTTTTGGTGTTGAATTATATATTTTTTCCGAGTATTGTGGCAAAAAATTGAGG
66 AACCCTTCAAT-TTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGG
* * ** * *
48276 AAAAAATTTTCGGGTTAGTTTTTGCATTATTTTAGCCGAAATCGTGTACTAACGATCACGGTTAT
130 AAAAAATTTTTGCGTTAG--TTT--AAAATTTTAGCCGAAATCGTGTACTAACCATCAC-G-TGT
* * * * *
48341 TGGCTAAAAACACGTTCCGGAGCCCC-AGCTCAATTTTGCATGATTTTTGGCGCAAATACTCCTT
189 T-G-TAAAAACGCTTTCCGGGGCCCCGA-CTCAGTTTTGCATGATTTTTGGCG-AAAGACTCCTT
* * * *
48405 GAAATATCTATATTCATCGAACCAAATTTCAGCCACAGTGGATATAAGGATTTGTTTTTACGAG-
250 GAAATATCTATATTCATTGAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGC
48469 --CTGAATC
315 ATCTGAATC
* * * * * *
48476 TTGTTTCGATTTAGTTA-AATTTAATTCGG-AATAAAATGG-AAAACGATATCAGAAGCATGAAA
1 TTGTTTCGATTTAATTAGAAATAAATTCGGAAAAAAAATGGAAAAACGATATTAGAAGCGTGAAA
* * * * * * *
48538 AGCCCGTCAATCTATTTGGAGTTGAATTATATA-TTTTTCTGAGTATTGTTGCAAAAAATTCAGT
66 AACCCTTCAAT-TTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGG
** * ** * *
48602 AAAAAATTTTT-CG--AG--TAAGTTTTTAGTCGAAATTATGTACTAACCATCACAATTTTTGGG
130 AAAAAATTTTTGCGTTAGTTTAAAATTTTAGCCGAAATCGTGTACTAACCATCAC--GTGTT--G
* ** *
48662 CTAAAAACGCGTTATGGGGCCCCGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTTGAAG
191 -TAAAAACGCTTTCCGGGGCCCCGACTCAGTTTTGCATGATTTTTGGC-GAAAGACTCCTTGAAA
* * *
48727 TAT-TGATATTCATCT-AACCGAATCTCAGCCACATTGGACTTAAGGACTTGTTTTTACGAGCAT
254 TATCT-ATATTCAT-TGAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCAT
48790 CTGAATC
317 CTGAATC
* * * * * *
48797 TTGTTTAGATTTAATTAAAAATAAATTTGG--AAAAAATAGAAAAACGATACTAGAAGCATGAAA
1 TTGTTTCGATTTAATTAGAAATAAATTCGGAAAAAAAATGGAAAAACGATATTAGAAGCGTGAAA
* * *
48860 AACCCTTCAAATTTTTTTGCATTGAATTATATATATTTTTCTGAGTATTGTGGCAAAAAATTCA-
66 AACCCTTC-AATTTTTTGGCGTTGAATTATATAT-TTTTTCTGAGTATTGTGGCAAAAAATTGAG
* ** * * ** * * * *
48924 G--TAAATTTTT-TTTTTGATTAAGTTTTTAGCCAAAATCATGTACTAACCATCAAAGTTTTTGG
129 GAAAAAATTTTTGCGTTAGTTTAAAATTTTAGCCGAAATCGTGTACTAACCATC-ACG-TGTT-G
* * * *
48986 CCTAAAAACACTTTACGGGGCCCCGACTCAGTTTTGCATGATTTTAGGTAGAAAGACTCCTTGAA
191 --TAAAAACGCTTTCCGGGGCCCCGACTCAGTTTTGCATGATTTTTGG-CGAAAGACTCCTTGAA
* * * * * * *
49051 ACT-TCAATATTCATCT-AATCGAATCTTAGGCAAATTGGATTTAAGGATTTGTTTTTACGAGTA
253 A-TATCTATATTCAT-TGAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCA
49114 TCTGAATC
316 TCTGAATC
* * ** * * *
49122 TTGTTTCGATTTAATTAAAAATATATTCGTGGGAAAAAATGGAAAAACGATATTAAAAACTTGAA
1 TTGTTTCGATTTAATTAGAAATAAATTCG-GAAAAAAAATGGAAAAACGATATTAGAAGCGTGAA
* * * *
49187 AAACCCTTCAATTTTTTTAGTGTTGAATTATATATTTTTTTCTGACTATTGTAGCAAAAAATTGA
65 AAACCCTTCAA-TTTTTTGGCGTTGAATTATATA-TTTTTTCTGAGTATTGTGGCAAAAAATTGA
* * * * * *
49252 GGGAAAAATTTTTGGGTTACTTTTGGCAAAATTTTATCTGAAATCGTGAAACTAACCATCACG
128 GGAAAAAATTTTTGCGTTA-GTTT---AAAATTTTAGCCGAAATCGTG-TACTAACCATCACG
49315 GTTTTTTGCC
Statistics
Matches: 2721, Mismatches: 536, Indels: 496
0.73 0.14 0.13
Matches are distributed among these distances:
317 42 0.02
318 143 0.05
319 20 0.01
320 75 0.03
321 96 0.04
322 171 0.06
323 213 0.08
324 186 0.07
325 356 0.13
326 90 0.03
327 167 0.06
328 112 0.04
329 110 0.04
330 41 0.02
331 88 0.03
332 214 0.08
333 97 0.04
334 69 0.03
335 80 0.03
336 37 0.01
337 21 0.01
338 11 0.00
339 2 0.00
340 6 0.00
342 1 0.00
343 7 0.00
344 1 0.00
345 3 0.00
346 2 0.00
347 1 0.00
348 1 0.00
349 2 0.00
350 5 0.00
351 2 0.00
352 8 0.00
353 8 0.00
354 3 0.00
355 2 0.00
356 8 0.00
357 2 0.00
359 4 0.00
360 7 0.00
361 9 0.00
362 2 0.00
363 6 0.00
364 2 0.00
365 1 0.00
366 1 0.00
367 2 0.00
368 4 0.00
369 1 0.00
370 7 0.00
371 1 0.00
373 6 0.00
374 4 0.00
375 17 0.01
376 17 0.01
377 23 0.01
378 32 0.01
379 5 0.00
380 3 0.00
382 14 0.01
383 50 0.02
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.35
Consensus pattern (323 bp):
TTGTTTCGATTTAATTAGAAATAAATTCGGAAAAAAAATGGAAAAACGATATTAGAAGCGTGAAA
AACCCTTCAATTTTTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGGA
AAAAATTTTTGCGTTAGTTTAAAATTTTAGCCGAAATCGTGTACTAACCATCACGTGTTGTAAAA
ACGCTTTCCGGGGCCCCGACTCAGTTTTGCATGATTTTTGGCGAAAGACTCCTTGAAATATCTAT
ATTCATTGAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATC
Found at i:47057 original size:654 final size:645
Alignment explanation
Indices: 45479--49318 Score: 2266
Period size: 654 Copynumber: 5.8 Consensus size: 645
45469 CGAAATCGTG
* * * * *
45479 TTGTTTTGATTTAATTAGAAATTAATTCGGAAGATAAATGGAAAAACGATATTAGAAGCGTGAAA
1 TTGTTTCGATTTAATTA-AAATTAATTCGGAAAAAAAATGGAAAAACGATATTAGAAGCATG-GA
* **
45544 AAACCTTCAATATTTTTGTCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAATT-TGAG
64 AAACCGTCAATATTTTTGTCGTTGAATTATATATTTTTTCTGAGTATTGTGAAAAAAATTCTGA-
* * * ***
45608 AAAAATTTCTTCGTGTCAGTTTTTAGCCGAAATCGTGTACTAACCTTCACCGTTTTTTTTTCCTA
128 AAAAA-TT-TTC-AGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCACAG--TTTTTGGGCTA
* * * * * * *
45673 AAAACGCGTTTTGGGGCCTCGACTCATTTTTG-AATGGTTTTTGGCATACAGACTCCTTAAAATA
188 AAAACGCGTTTAGGGGCCCCGACTCAGTTTTGCAA-GATTTTTGGCAGAAAGACTCCTTGAAATA
* * * * * *
45737 TCTATATTCATGTAACCAAATCTCTGCCACACTAGATTTAAGGATTTGTTTTTAGGAGCATCTGA
252 TCGATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGA
* * *
45802 ATCTCGTTTCGATTTAATTAGAAATAAATTCGGAAAAAAAATGG-AAAACGATATTAGAAGTGTG
317 ATCTTGTTTCGATTTAATTAGAAATAAATTCGG-AAAAAAATGGAAAAATGATATTAGAAGCGTG
* * * * *
45866 AAAAACCCTTCAATTTTTGTGGCATTGAATTTTATATTTTTTCTGAGTATTGTGGCAAAAATTGA
381 AAAAACCCTTCAATTTTTTTGG-TTTGAATTATATATTTTTTCTGAGTATTGTAGAAAAAATTGA
* * * * *
45931 GGAAAAATTTTTTGCGTTAGTTTTTGCAAAATTTTAGCCGAAATCATGTACTAACCATCACGGTT
445 GGAAAAAATTTTCGCGTCAGTTTTTGCAAAAATTTAGCCGAAACCATGTACTAACCATCACGGTT
* * * *
45996 TAAAAACGCTTTCCGAAGACACGTCTCAATTTTGCTTGATTTTTGGCGCAAAGACTCCTCGAAAT
510 TAAAAACGCTTTCCGAAGACACGACTCAATTTTGCATAATTTTTGGCACAAAGACTCCTCGAAAT
* ** * *
46061 ATCTATATTCATTGAACCAAATTTCAGTGACATTGGATATAAGGATTTGTTTTTACGAGCATCTG
575 ATCTATATTCATCGAACCAAATCCCAGCGACATTGGATATAAGGATTTGTTTTTACAAGCATCT-
46126 AACTGAATC
639 -A-TGAATC
* * * * *
46135 TTGTTTCGATTTAGTTAAAATTATTTCGG-AAAACAATGGAAAAACGATATTCGAATCAT-GAAA
1 TTGTTTCGATTTAATTAAAATTAATTCGGAAAAAAAATGGAAAAACGATATTAGAAGCATGGAAA
* * * * * *
46198 AGCCCGTCAATCTATTCGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTCAGA
66 A--CCGTCAATATTTTTGTCGTTGAATTATATATTTTTTCTGAGTATTGT-GAAAAAAATTCTGA
* * * * * *
46263 AGAAAATTTTCGAGTAAGTTTTAAGCCAAAATCATGTACTAACCATCACGGTTTTTGGGTTAAAA
128 A-AAAATTTTC-AGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCACAGTTTTTGGGCTAAAA
* * ** * *
46328 TCGCGTTAAGGGGCCCCGACTCAGTTTTGCATTATTTTTGGCAGAAAAACTCCTTGAAAGATCGA
191 ACGCGTTTAGGGGCCCCGACTCAGTTTTGCAAGATTTTTGGCAGAAAGACTCCTTGAAATATCGA
*
46393 TATTCATCTAACCGAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCT
256 TATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCT
*
46458 TGTTTCGATTTAATAAGAAATAAATTCGGAAAAAAATGGAAAAATGATATTAGAAGCGTGAAAAA
321 TGTTTCGATTTAATTAGAAATAAATTCGGAAAAAAATGGAAAAATGATATTAGAAGCGTGAAAAA
** *
46523 CCCTTCAATTTTTTTTGGTTTGAATTATATATTTAATCTGAGTATTTTAGAAAAGAATTGAGGAA
386 CCCTTCAA-TTTTTTTGGTTTGAATTATATATTTTTTCTGAGTATTGTAGAAAA-AATTGAGGAA
* * * * *
46588 AAAATTTTCGGGTCAGTTTTTTGTAAAAATTTAGCCGAAACCGTGTATTAACCATCACATGTTTT
449 AAAATTTTCGCGTCAG-TTTTTGCAAAAATTTAGCCGAAACCATGTACTAACCATCAC--G--GT
* * * * * * * *
46653 TGGTAAAAATG-TGTTCCG-GGGCCCTGACTCAGTTTTGCATAATTTTTGGCATAAAGACTTCTT
509 T--TAAAAACGCT-TTCCGAAGACAC-GACTCAATTTTGCATAATTTTTGGCACAAAGACTCCTC
*
46716 G-AATATCTATATTCATCGAACCAAATCCCAGCCG-CATTGGATTTAAGGATTTGTTTTTACAAG
570 GAAATATCTATATTCATCGAACCAAATCCCAG-CGACATTGGATATAAGGATTTGTTTTTACAAG
46779 CATCT-T-AATC
634 CATCTATGAATC
* *
46789 TTGTTTCGATTTAATTCAAAATTAATTCCGAGAAAAAAAAT-GATAAAATGATATTTGAAGCATG
1 TTGTTTCGATTTAATT-AAAATTAATT-CG-GAAAAAAAATGGA-AAAACGATATTAGAAGCATG
*
46853 GAAAACTCGTCAATATTTTTGTCGTTGAA-T-TAT-TTTTTCCTGAGTATTGTGAAAAAAAATTC
62 GAAAAC-CGTCAATATTTTTGTCGTTGAATTATATATTTTTTCTGAGTATTGTG-AAAAAAATTC
* * *
46915 TGAAAAAATTTTCACGTCAGTTTTTAGCCGAAATCGTGAACTAAGCATAACAGTTTTTGGGCTAA
125 TGAAAAAATTTTCA-GTCAGTTTTTAGCCGAAATCGTGTACTAACCATCACAGTTTTTGGGCTAA
* * **
46980 AAACACGTTTCGGGGCCCCGACTCAGTTTTGCAAGATTTTTGGCAGAAAGACAACTTGAAATATC
189 AAACGCGTTTAGGGGCCCCGACTCAGTTTTGCAAGATTTTTGGCAGAAAGACTCCTTGAAATATC
* **
47045 GATATGCATCTAACCAAATCTCAGCCACATTGGATTTAATTATTTGTTTTTACGAGCATCTGAAT
254 GATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAAT
* * *
47110 ATTGTTTCGATTTAATTAGAAATAAATTCAG-AAAAAATGGAAAAATGATATTAGAAGCGTTAAA
319 CTTGTTTCGATTTAATTAGAAATAAATTCGGAAAAAAATGGAAAAATGATATTAGAAGCGTGAAA
* **
47174 AACCCTTCAA-TTTTTTAGTGTTGAATTATATATTTTTTCTGAGTATTGCGGCAAAAAATTGTA-
384 AACCCTTCAATTTTTTTGGT-TTGAATTATATATTTTTTCTGAGTATTGTAG-AAAAAATTG-AG
*** ** * ** * * *** * *
47237 G--AAACCCTTC-AATCTATTTTGCGTTG-AATTATATATTTTTTCTGAGTATTGTGGTA-AAAA
446 GAAAAAATTTTCGCGTC-AGTTT---TTGCAA--A-A-A-TTTAGCCGA-AACCAT-GTACTAAC
* *** * * *
47297 AATCA-GAAGAATTCTTTTGGGTAA-GTTTTTAGCCGAA-ATCATGTACCATCACGGTTTTTGGG
500 CATCACG--G------TTT-AAAAACG-CTTT--CCGAAGA-CACG-A-C-TCA---ATTTT--G
* ** * * ** ** * *
47359 CTAAAAACGCGTTATGGGGCCCCGACTCAGTTTTTCATGATTTTTGGCAGAAGGACTCCTTAAAA
544 C--ATAA----TT-TTTGG---C-A--CA-------AAGACTCCT--C-GAAATA-T-C-TATAT
* ** * * * * *
47424 T-ATCGATATTC--ATCTAACCGA-ATCTCAAGGACAT-TGGATATAAGGATTTGTTTTTACGAG
583 TCATCGA-A-CCAAATCCCAGCGACAT-T---GGATATAAGGAT-T--TG--TT-TTT--ACAAG
*
47484 TATC--TGAATC
634 CATCTATGAATC
* * *
47494 TTGTTTCGATTTAATTAAAAATTAATTC-G--AAAAAATGGAAAAACGATATTAGAAACGTGAAA
1 TTGTTTCGATTTAATT-AAAATTAATTCGGAAAAAAAATGGAAAAACGATATTAGAAGCATGGAA
* * * * * * * **
47556 AACCCTCCAATCTTTATGGCGTTGAATTATATATTTTTTCTAAGTATTGCGGCAAAAAATTGAGG
65 AACCGT-CAATATTTTTGTCGTTGAATTATATATTTTTTCTGAGTATTG-TGAAAAAAATT-CTG
* * *
47621 AAAAAATTTTCGGGTTAGTTTTTGCAAAATTTTACCGAAATCGTGTA-TAAACCATCACAGTTTT
127 AAAAAATTTTC-AGTCAGTTTTT-----A----GCCGAAATCGTGTACT-AACCATCACAGTTTT
** * * * * ** *
47685 T-AACTAAAAACGC-TTTCCGGAGCCCCGGCTCAATTTCACATGATTTTTTGGC-GCAAAGACTC
181 TGGGCTAAAAACGCGTTT-AGGGGCCCCGACTCAGTTTTGCAAGA-TTTTTGGCAG-AAAGACTC
* * * * * *
47747 CTTGAAATATCTATATTCATCGAACCAAATTTCAGCCATAGTGGATATACA-GATTTGTTTTTAC
243 CTTGAAATATCGATATTCATCTAACCAAATCTCAGCCACATTGGATTTA-AGGATTTGTTTTTAC
* * * * *
47811 GAGCATCTAAATCTTGTTTCGATTTAGTTA-AAATTAATTCAGAAAAAAATGGAAAAACGATATT
307 GAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGGAAAAAAATGGAAAAATGATATT
* * * * * *
47875 AGAAGCATGAAAAGCCCGTCAATTTATTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGC
372 AGAAGCGTGAAAAACCCTTCAATTTTTTTGG-TTTGAATTATATATTTTTTCTGAGTATTGTAG-
* * ** * * *
47940 AAAAAATTCA-GAAGAAAATTTT----TCAG---AT---AAGTTGTTAACCAAAATCATGTACTA
435 AAAAAATTGAGGAA-AAAATTTTCGCGTCAGTTTTTGCAAAAAT-TTAGCCGAAACCATGTACTA
* * * * * ** * * * * *
47994 ATCATAACGGTTTTTGGGTTAAAAATGCATTACGGGGCCCCGACTCAGTTTGGCATGATTTTTGG
498 ACCATCACGG----T---TTAAAAACGCTTTCCGAAGACACGACTCAATTTTGCATAATTTTTGG
* * * * * * ** * * *
48059 CAGAAAGACTCCTTGAAATATCAATATTCATCTAATCGAATTTCAGCCACATTGGATTTAAGGAC
556 CACAAAGACTCCTCGAAATATCTATATTCATCGAACCAAATCCCAGCGACATTGGATATAAGGAT
* *
48124 TTGTTTTTGCGAGCATCTA--AATC
621 TTGTTTTTACAAGCATCTATGAATC
* * * * *
48147 TTGTTTCGATTTAATTAAAAATAAATTTGGGAAAAAAA-GGAAAAACAATATTAGAAGCGT-GAA
1 TTGTTTCGATTTAATT-AAAATTAATTCGGAAAAAAAATGGAAAAACGATATTAGAAGCATGGAA
* * * *
48210 ACACCCTTCAATATTTTTGGT-GTTGAATTATATATTTTTTCCGAGTATTGTGGCAAAAAATTGA
65 A-A-CCGTCAATATTTTT-GTCGTTGAATTATATATTTTTTCTGAGTATTGT-GAAAAAAATT-C
* * * *
48274 GGAAAAAATTTTCGGGTTAGTTTTTGCATTATTTTAGCCGAAATCGTGTACTAACGATCACGGTT
125 TGAAAAAATTTTC-----AG----T-CAGT-TTTTAGCCGAAATCGTGTACTAACCATCACAGTT
* * ** * * * *
48339 ATT-GGCTAAAAACACGTTCCGGAGCCCC-AGCTCAATTTTGCATGATTTTTGGC-GCAAATACT
179 TTTGGGCTAAAAACGCGTTTAGGGGCCCCGA-CTCAGTTTTGCAAGATTTTTGGCAG-AAAGACT
* * * * *
48401 CCTTGAAATATCTATATTCATCGAACCAAATTTCAGCCACAGTGGATATAAGGATTTGTTTTTAC
242 CCTTGAAATATCGATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTAC
* * * * * *
48466 GAG---CTGAATCTTGTTTCGATTTAGTTA-AATTTAATTCGGAATAAAATGG-AAAACGATATC
307 GAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGGAAAAAAATGGAAAAATGATATT
* * * * * * *
48526 AGAAGCATGAAAAGCCCGTCAATCTATTTGGAGTTGAATTATATA-TTTTTCTGAGTATTGTTGC
372 AGAAGCGTGAAAAACCCTTCAATTTTTTTGG-TTTGAATTATATATTTTTTCTGAGTATTGTAG-
* * * * * * * *
48590 AAAAAATTCAGTAAAAAATTTTTCGAGTAAGTTTTTAGTC-GAAA-TTATGTAC-TAACCAT-CA
435 AAAAAATTGAGGAAAAAA-TTTTCGCGTCAGTTTTT-G-CAAAAATTTA-G-CCGAAACCATGTA
* *** ** * ** ** * * * * *
48651 C-AA--TTTTTGGGCTAAAAACGCGTTATGGGGCCCCGACTCAGTTTTGCATGATTTTTGGCAGA
495 CTAACCATCACGGTTTAAAAACGCTTTCCGAAGACACGACTCAATTTTGCATAATTTTTGGCACA
* * * * * * *
48713 AAGACTCCTTGAAGTAT-TGATATTCATCTAACCGAATCTCAGCCACATTGGACT-TAAGGACTT
560 AAGACTCCTCGAAATATCT-ATATTCATCGAACCAAATCCCAGCGACATTGGA-TATAAGGATTT
*
48776 GTTTTTACGAGCATC--TGAATC
623 GTTTTTACAAGCATCTATGAATC
* * * * * *
48797 TTGTTTAGATTTAATTAAAAATAAATTTGG--AAAAAATAGAAAAACGATACTAGAAGCATGAAA
1 TTGTTTCGATTTAATT-AAAATTAATTCGGAAAAAAAATGGAAAAACGATATTAGAAGCATGGAA
* * * * *
48860 AACCCTTCAA-ATTTTTTTGCATTGAATTATATATATTTTTCTGAGTATTGTGGCAAAAAATTCA
65 AA-CCGTCAATATTTTTGT-CGTTGAATTATATAT-TTTTTCTGAGTATTGT-GAAAAAAATTCT
*** * * * * * * *
48924 GTAAATTTTTTTTTTGATTAAGTTTTTAGCCAAAATCATGTACTAACCATCAAAGTTTTTGGCCT
126 G-AAA---AAATTTTCAGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCACAGTTTTTGGGCT
* * * *
48989 AAAAACAC-TTTACGGGGCCCCGACTCAGTTTTGCATGATTTTAGGTAGAAAGACTCCTTGAAAC
187 AAAAACGCGTTTA-GGGGCCCCGACTCAGTTTTGCAAGATTTTTGGCAGAAAGACTCCTTGAAA-
* * * * * * *
49053 T-TCAATATTCATCTAATCGAATCTTAGGCAAATTGGATTTAAGGATTTGTTTTTACGAGTATCT
250 TATCGATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCT
* * * * * *
49117 GAATCTTGTTTCGATTTAATTAAAAATATATTCGTGGGAAAAAATGGAAAAACGATATTAAAAAC
315 GAATCTTGTTTCGATTTAATTAGAAATAAATTC--GGAAAAAAATGGAAAAATGATATTAGAAGC
* * *
49182 TTGAAAAACCCTTCAATTTTTTTAGTGTTGAATTATATATTTTTTTCTGACTATTGTAGCAAAAA
378 GTGAAAAACCCTTCAATTTTTTTGGT-TTGAATTATATA-TTTTTTCTGAGTATTGTAG-AAAAA
* * * * * * * * * * * *
49247 ATTGAGGGAAAAATTTTTGGGTTACTTTTGGCAAAATTTTATCTGAAATCGTGAAACTAACCATC
440 ATTGAGGAAAAAATTTTCGCGTCAGTTTTTGCAAAAATTTAGCCGAAACCATG-TACTAACCATC
49312 ACGGTTT
504 ACGGTTT
49319 TTTGCCAAAT
Statistics
Matches: 2520, Mismatches: 443, Indels: 443
0.74 0.13 0.13
Matches are distributed among these distances:
642 33 0.01
643 102 0.04
644 4 0.00
646 23 0.01
647 8 0.00
648 13 0.01
649 57 0.02
650 272 0.11
651 95 0.04
652 320 0.13
653 123 0.05
654 359 0.14
655 233 0.09
656 102 0.04
657 20 0.01
658 50 0.02
659 75 0.03
660 58 0.02
661 14 0.01
662 8 0.00
663 14 0.01
664 8 0.00
665 8 0.00
667 4 0.00
668 5 0.00
669 2 0.00
671 3 0.00
675 3 0.00
676 3 0.00
677 1 0.00
678 1 0.00
679 1 0.00
680 1 0.00
681 3 0.00
682 3 0.00
686 2 0.00
688 2 0.00
689 6 0.00
690 3 0.00
692 1 0.00
693 5 0.00
694 6 0.00
695 12 0.00
696 13 0.01
697 5 0.00
698 13 0.01
699 14 0.01
700 50 0.02
701 3 0.00
702 7 0.00
703 25 0.01
704 25 0.01
705 37 0.01
706 1 0.00
709 1 0.00
711 3 0.00
712 43 0.02
713 163 0.06
714 46 0.02
716 5 0.00
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.35
Consensus pattern (645 bp):
TTGTTTCGATTTAATTAAAATTAATTCGGAAAAAAAATGGAAAAACGATATTAGAAGCATGGAAA
ACCGTCAATATTTTTGTCGTTGAATTATATATTTTTTCTGAGTATTGTGAAAAAAATTCTGAAAA
AATTTTCAGTCAGTTTTTAGCCGAAATCGTGTACTAACCATCACAGTTTTTGGGCTAAAAACGCG
TTTAGGGGCCCCGACTCAGTTTTGCAAGATTTTTGGCAGAAAGACTCCTTGAAATATCGATATTC
ATCTAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTT
CGATTTAATTAGAAATAAATTCGGAAAAAAATGGAAAAATGATATTAGAAGCGTGAAAAACCCTT
CAATTTTTTTGGTTTGAATTATATATTTTTTCTGAGTATTGTAGAAAAAATTGAGGAAAAAATTT
TCGCGTCAGTTTTTGCAAAAATTTAGCCGAAACCATGTACTAACCATCACGGTTTAAAAACGCTT
TCCGAAGACACGACTCAATTTTGCATAATTTTTGGCACAAAGACTCCTCGAAATATCTATATTCA
TCGAACCAAATCCCAGCGACATTGGATATAAGGATTTGTTTTTACAAGCATCTATGAATC
Found at i:47296 original size:65 final size:65
Alignment explanation
Indices: 47173--47297 Score: 198
Period size: 66 Copynumber: 1.9 Consensus size: 65
47163 GAAGCGTTAA
*
47173 AAACCCTTCAATTTTTTAGTGTTGAATTATATATTTTTTCTGAGTATTGCGGCAAAAAATTGTAG
1 AAACCCTTCAATTTTTTAGCGTTGAATTATATATTTTTTCTGAGTATTGCGGCAAAAAATTGTAG
* *
47238 AAACCCTTCAATCTATTTT-GCGTTGAATTATATATTTTTTCTGAGTATTGTGGTAAAAAA
1 AAACCCTTCAAT-T-TTTTAGCGTTGAATTATATATTTTTTCTGAGTATTGCGGCAAAAAA
47298 ATCAGAAGAA
Statistics
Matches: 55, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
65 12 0.22
66 39 0.71
67 4 0.07
ACGTcount: A:0.31, C:0.11, G:0.14, T:0.43
Consensus pattern (65 bp):
AAACCCTTCAATTTTTTAGCGTTGAATTATATATTTTTTCTGAGTATTGCGGCAAAAAATTGTAG
Found at i:48819 original size:650 final size:648
Alignment explanation
Indices: 47245--49264 Score: 2554
Period size: 650 Copynumber: 3.1 Consensus size: 648
47235 TAGAAACCCT
* * * *
47245 TCAATCTATTTTGCGTTGAATTATATATTTTTTCTGAGTATTGTGGTAAAAAAATCAG-AAGAAT
1 TCAATCTATTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTCAGAAAAAAT
* *
47309 TCTTTTGGGTAAGTTTTTAGCCGAAATCATG---T-ACCATCACGGTTTTTGGGCTAAAAACGCG
66 T-TTTCGAGTAAGTTTTTAGCCGAAATCATGTACTAACCATCACGGTTTTTGGGCTAAAAACGCG
* * *
47370 TTATGGGGCCCCGACTCAGTTTTTCATGATTTTTGGCAGAAGGACTCCTTAAAATATCGATATTC
130 TTATGGGGCCCCGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCGATATTC
* * *
47435 ATCTAACCGAATCTCAAG-GACATTGGATATAAGGATTTGTTTTTACGAGTATCTGAATCTTGTT
195 ATCTAACCGAATCTC-AGCCACATTGGAT-TAAGGACTTGTTTTTACGAGCATCTGAATCTTGTT
* * * * *
47499 TCGATTTAATTAAAAATTAA-TTCGAAAAAATGGAAAAACGATATTAGAAACGTGAAAAACCCTC
258 TCGATTTAATTAAAAATAAATTTGGAAAAAAAGGAAAAACGATATTAGAAGCGTGAAAAACCCTT
* * * * *
47563 CAATCTTTATGGCGTTGAATTATATATTTTTTCTAAGTATTGCGGCAAAAAATTGAGGAAAAAAT
323 CAATATTTTTGGTGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGGAAAAAAT
** **
47628 TTTCGGGTTAGTTTTTGCAAAATTTTA-CCGAAATCGTGTA-TAAACCATCACAGTTTTTAACTA
388 TTTCGGGTTAGTTTTTGCATTATTTTAGCCGAAATCGTGTACT-AACCATCACAGTTTTTGGCTA
* **
47691 AAAACGCTTTCCGGAGCCCCGGCTCAATTTCACATGATTTTTTGGCGCAAAGACTCCTTGAAATA
452 AAAACACTTTCCGGAGCCCC-GCTCAATTTTGCATGA-TTTTTGGCGCAAAGACTCCTTGAAATA
* *
47756 TCTATATTCATCGAACCAAATTTCAGCCATAGTGGATATACA-GATTTGTTTTTACGAGCATCTA
515 TCTATATTCATCGAACCAAATTTCAGCCAAAGTGGATATA-AGGATTTGTTTTTACGAG--TCTG
*
47820 AATCTTGTTTCGATTTAGTTAAAATTAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCATGA
577 AATCTTGTTTCGATTTAGTTAAAATTAATTC-GGAAAAAATGGAAAAACGATATTAGAAGCATGA
47885 AAAGCCCG
641 AAAGCCCG
*
47893 TCAATTTATTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTCAGAAGAAAA
1 TCAATCTATTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTCAGAA-AAAA
* * * * * * *
47958 TTTTTC-AGATAAGTTGTTAACCAAAATCATGTACTAATCATAACGGTTTTTGGGTTAAAAATGC
65 TTTTTCGAG-TAAGTTTTTAGCCGAAATCATGTACTAACCATCACGGTTTTTGGGCTAAAAACGC
* * * *
48022 ATTACGGGGCCCCGACTCAGTTTGGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCAATATT
129 GTTATGGGGCCCCGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCGATATT
* * * *
48087 CATCTAATCGAATTTCAGCCACATTGGATTTAAGGACTTGTTTTTGCGAGCATCTAAATCTTGTT
194 CATCTAACCGAATCTCAGCCACATTGGA-TTAAGGACTTGTTTTTACGAGCATCTGAATCTTGTT
* *
48152 TCGATTTAATTAAAAATAAATTTGGGAAAAAAAGGAAAAACAATATTAGAAGCGTGAAACACCCT
258 TCGATTTAATTAAAAATAAATTT-GGAAAAAAAGGAAAAACGATATTAGAAGCGTGAAAAACCCT
*
48217 TCAATATTTTTGGTGTTGAATTATATATTTTTTCCGAGTATTGTGGCAAAAAATTGAGGAAAAAA
322 TCAATATTTTTGGTGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGGAAAAAA
* * *
48282 TTTTCGGGTTAGTTTTTGCATTATTTTAGCCGAAATCGTGTACTAACGATCACGGTTATTGGCTA
387 TTTTCGGGTTAGTTTTTGCATTATTTTAGCCGAAATCGTGTACTAACCATCACAGTTTTTGGCTA
* *
48347 AAAACACGTTCCGGAGCCCCAGCTCAATTTTGCATGATTTTTGGCGCAAATACTCCTTGAAATAT
452 AAAACACTTTCCGGAGCCCC-GCTCAATTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATAT
*
48412 CTATATTCATCGAACCAAATTTCAGCCACAGTGGATATAAGGATTTGTTTTTACGAG-CTGAATC
516 CTATATTCATCGAACCAAATTTCAGCCAAAGTGGATATAAGGATTTGTTTTTACGAGTCTGAATC
* *
48476 TTGTTTCGATTTAGTTAAATTTAATTCGGAATAAAATGG-AAAACGATATCAGAAGCATGAAAAG
581 TTGTTTCGATTTAGTTAAAATTAATTCGGAA-AAAATGGAAAAACGATATTAGAAGCATGAAAAG
48540 CCCG
645 CCCG
* *
48544 TCAATCTATTTGGAGTTGAATTATATA-TTTTTCTGAGTATTGTTGCAAAAAATTCAGTAAAAAA
1 TCAATCTATTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTCAG-AAAAAA
* * **
48608 TTTTTCGAGTAAGTTTTTAGTCGAAATTATGTACTAACCATCACAATTTTTGGGCTAAAAACGCG
65 TTTTTCGAGTAAGTTTTTAGCCGAAATCATGTACTAACCATCACGGTTTTTGGGCTAAAAACGCG
* *
48673 TTATGGGGCCCCGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTTGAAGTATTGATATTC
130 TTATGGGGCCCCGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCGATATTC
48738 ATCTAACCGAATCTCAGCCACATTGGACTTAAGGACTTGTTTTTACGAGCATCTGAATCTTGTTT
195 ATCTAACCGAATCTCAGCCACATTGGA-TTAAGGACTTGTTTTTACGAGCATCTGAATCTTGTTT
* * *
48803 AGATTTAATTAAAAATAAATTTGGAAAAAATA-GAAAAACGATACTAGAAGCATGAAAAACCCTT
259 CGATTTAATTAAAAATAAATTTGGAAAAAA-AGGAAAAACGATATTAGAAGCGTGAAAAACCCTT
* * *
48867 CAA-ATTTTT-TTGCATTGAATTATATATATTTTTCTGAGTATTGTGGCAAAAAATTCA-G--TA
323 CAATATTTTTGGTG--TTGAATTATATAT-TTTTTCTGAGTATTGTGGCAAAAAATTGAGGAAAA
* * *
48927 AA-TTT----TT--TTTTTG-ATTAAGTTTTTAGCCAAAATCATGTACTAACCATCAAAGTTTTT
385 AATTTTCGGGTTAGTTTTTGCATT-A--TTTTAGCCGAAATCGTGTACTAACCATCACAGTTTTT
* * * * *
48984 GGCCTAAAAACACTTTACGGGGCCCCGACTCAGTTTTGCATGATTTTAGGTAG-AAAGACTCCTT
447 GG-CTAAAAACACTTTCCGGAGCCCCG-CTCAATTTTGCATGATTTTTGG-CGCAAAGACTCCTT
* * * * * * *
49048 GAAACT-TCAATATTCATCTAATCGAATCTT-AGGCAAATTGGATTTAAGGATTTGTTTTTACGA
509 GAAA-TATCTATATTCATCGAACCAAAT-TTCAGCCAAAGTGGATATAAGGATTTGTTTTTACGA
* *
49111 GTATCTGAATCTTGTTTCGATTTAATTAAAAATATATTCGTGGGAAAAAATGGAAAAACGATATT
572 G--TCTGAATCTTGTTTCGATTTAGTTAAAATTA-ATTC---GGAAAAAATGGAAAAACGATATT
* * * * *
49176 AAAAACTTGAAAAACCCT
631 AGAAGCATGAAAAGCCCG
* * * * * * * *
49194 TCAATTTTTTTAGTGTTGAATTATATATTTTTTTCTGACTATTGTAGCAAAAAATTGAGGGAAAA
1 TCAATCTATTTGGCGTTGAATTATATA-TTTTTTCTGAGTATTGTGGCAAAAAATTCA-GAAAAA
49259 ATTTTT
64 ATTTTT
49265 GGGTTACTTT
Statistics
Matches: 1201, Mismatches: 131, Indels: 76
0.85 0.09 0.05
Matches are distributed among these distances:
639 3 0.00
640 7 0.01
642 36 0.03
643 101 0.08
644 4 0.00
646 30 0.02
647 9 0.01
648 61 0.05
649 83 0.07
650 307 0.26
651 60 0.05
652 78 0.06
653 155 0.13
654 4 0.00
655 201 0.17
656 61 0.05
657 1 0.00
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.35
Consensus pattern (648 bp):
TCAATCTATTTGGCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTCAGAAAAAAT
TTTTCGAGTAAGTTTTTAGCCGAAATCATGTACTAACCATCACGGTTTTTGGGCTAAAAACGCGT
TATGGGGCCCCGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCGATATTCA
TCTAACCGAATCTCAGCCACATTGGATTAAGGACTTGTTTTTACGAGCATCTGAATCTTGTTTCG
ATTTAATTAAAAATAAATTTGGAAAAAAAGGAAAAACGATATTAGAAGCGTGAAAAACCCTTCAA
TATTTTTGGTGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTGAGGAAAAAATTTT
CGGGTTAGTTTTTGCATTATTTTAGCCGAAATCGTGTACTAACCATCACAGTTTTTGGCTAAAAA
CACTTTCCGGAGCCCCGCTCAATTTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATA
TTCATCGAACCAAATTTCAGCCAAAGTGGATATAAGGATTTGTTTTTACGAGTCTGAATCTTGTT
TCGATTTAGTTAAAATTAATTCGGAAAAAATGGAAAAACGATATTAGAAGCATGAAAAGCCCG
Found at i:49128 original size:975 final size:979
Alignment explanation
Indices: 47323--49317 Score: 2502
Period size: 975 Copynumber: 2.0 Consensus size: 979
47313 TTGGGTAAGT
* * * * *
47323 TTTTAGCCGAAATCATGTAC---CATCACGGTTTTTGGGCTAAAAACGCGTTATGGGGCCCCGAC
1 TTTTAGCCGAAATCGTGTACTAACATCACGGTTATTGGGCTAAAAACACGTTACGGAGCCCCGAC
* * * * *
47385 TCAGTTTTTCATGATTTTTGGCAGAAGGACTCCTTAAAATATCGATATTCATCTAACCGAATCTC
66 TCAATTTTGCATGATTTTTGGCAGAAAGACTCCTTAAAATATCGATATTCATCGAACCAAATCTC
* *
47450 AAGGACATTGGATATAAGGATTTGTTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAAAAA
131 AAGCACAGTGGATATAAGGATTTGTTTTTACGAG--TCTGAATCTTGTTTCGATTTAATTAAAAA
* * *
47515 TTAATTCGAAAAAATGGAAAAACGATATTAGAAACGTGAAAAACCCTCCAATCTTTATGGCGTTG
194 TTAATTCGAAAAAATGGAAAAACGATATCAGAAACATGAAAAACCCTCCAATCTTTATGGAGTTG
* * *
47580 AATTATATATTTTTTCTAAGTATTGCGGCAAAAAATTGAGGAAAAAATTTTCGGGTTAGTTTTTG
259 AATTATATATTTTTTCTAAGTATTGCGGCAAAAAATTCAGGAAAAAATTTTCGAGTAAGTTTTT-
* * * * *
47645 CAAAATTTTACCGAAATCGTGTATAAACCATCACAGTTTTTAACTAAAAACGCTTTCCGGAGCCC
323 ---AA-TGTA-CGAAATCATGTATAAACCATCACAATTTTTAACTAAAAACGCGTTACGGAGCCC
*
47710 CGGCTCAATTTCACATGATTTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCGAACCAA
383 CGACTCAATTTCACATGATTTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCGAACCAA
* * * * *
47775 ATTTCAGCCATAGTGGATATACAGATTTGTTTTTACGAGCATCTAAATCTTGTTTCGATTTAGTT
448 ATCTCAGCCACAGTGGATATACAGACTTGTTTTTACGAGCATCTAAATCTTGTTTAGATTTAATT
* * * *
47840 AAAATTAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCATGAAAAGCCCGTCAATTTATTTG
513 AAAATAAATTCAGAAAAAAATAGAAAAACGATACTAGAAGCATGAAAAACCCGTCAATTTATTTG
*
47905 GCGTTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTCAGAAGAAAATTTTTCAGATAA
578 GCATTGAATTATATATTTTTTCTGAGTATTGTGGCAAAAAATTCAGAAGAAAATTTTTCAGATAA
* * ** **
47970 GTTGTTAACCAAAATCATGTACTAATCATAACGGTTTTTGGGTTAAAAATGCATTACGGGGCCCC
643 GTTGTTAACCAAAATCATGTACTAACCATAACAGTTTTTGGCCTAAAAACACATTACGGGGCCCC
*
48035 GACTCAGTTTGGCATGATTTTTGGCAGAAAGACTCCTTGAAATATCAATATTCATCTAATCGAAT
708 GACTCAGTTTGGCATGATTTTAGGCAGAAAGACTCCTTGAAATATCAATATTCATCTAATCGAAT
* *
48100 TTCAGCCACATTGGATTTAAGGACTTGTTTTTGCGAGCATCTAAATCTTGTTTCGATTTAATTAA
773 TTCAGCCAAATTGGATTTAAGGACTTGTTTTTACGAGCATCTAAATCTTGTTTCGATTTAATTAA
* * * *
48165 AAATAAATT-TGGGAAAAAAAGGAAAAACAATATTAGAAGCGTGAAACACCCTTCAATATTTTTG
838 AAATAAATTCTGGGAAAAAAAGGAAAAACAATATTAAAAACGTGAAAAACCCTTCAATATTTTTA
* *
48229 GTGTTGAATTATATA-TTTTTTCCGAGTATTGTGGCAAAAAATTGAGGAAAAAATTTTCGGGTTA
903 GTGTTGAATTATATATTTTTTTCCGACTATTGTAGCAAAAAATTGAGGAAAAAATTTTCGGGTTA
* * **
48293 GTTTTTGCATTA
968 CTTTTGGCAAAA
*
48305 TTTTAGCCGAAATCGTGTACTAACGATCACGGTTATT-GGCTAAAAACACGTTCCGGAGCCCC-A
1 TTTTAGCCGAAATCGTGTACTAAC-ATCACGGTTATTGGGCTAAAAACACGTTACGGAGCCCCGA
* * *
48368 GCTCAATTTTGCATGATTTTTGGC-GCAAATACTCCTTGAAATATCTATATTCATCGAACCAAAT
65 -CTCAATTTTGCATGATTTTTGGCAG-AAAGACTCCTTAAAATATCGATATTCATCGAACCAAAT
* *
48432 TTC-AGCCACAGTGGATATAAGGATTTGTTTTTACGAG-CTGAATCTTGTTTCGATTTAGTT-AA
128 CTCAAG-CACAGTGGATATAAGGATTTGTTTTTACGAGTCTGAATCTTGTTTCGATTTAATTAAA
* * *
48494 ATTTAATTCGGAATAAAATGG-AAAACGATATCAGAAGCATGAAAAGCCCGT-CAATCTATT-TG
192 AATTAATTC-GAA-AAAATGGAAAAACGATATCAGAAACATGAAAAACCC-TCCAATCT-TTATG
* ** *
48556 GAGTTGAATTATATA-TTTTTCTGAGTATTGTTGCAAAAAATTCAGTAAAAAATTTTTCGAGTAA
253 GAGTTGAATTATATATTTTTTCTAAGTATTGCGGCAAAAAATTCAGGAAAAAA-TTTTCGAGTAA
* ** * *
48620 GTTTTT-A-GT-CGAAATTATGTACT-AACCATCACAATTTTTGGGCTAAAAACGCGTTATGGGG
317 GTTTTTAATGTACGAAATCATGTA-TAAACCATCACAATTTTT-AACTAAAAACGCGTTACGGAG
* ** * *
48681 CCCCGACTCAGTTTTGCATGA-TTTTTGGCAG-AAAGACTCCTTGAAGTAT-TGATATTCATCTA
380 CCCCGACTCAATTTCACATGATTTTTTGGC-GCAAAGACTCCTTGAAATATCT-ATATTCATCGA
* * *
48743 ACCGAATCTCAGCCACATTGGACT-TA-AGGACTTGTTTTTACGAGCATCTGAATCTTGTTTAGA
443 ACCAAATCTCAGCCACAGTGGA-TATACA-GACTTGTTTTTACGAGCATCTAAATCTTGTTTAGA
* * *
48806 TTTAATTAAAAATAAATT-TGGAAAAAATAGAAAAACGATACTAGAAGCATGAAAAACCCTTCAA
506 TTTAATT-AAAATAAATTCAGAAAAAAATAGAAAAACGATACTAGAAGCATGAAAAACCCGTC-A
* ***
48870 ATTT-TTTTGCATTGAATTATATATATTTTTCTGAGTATTGTGGCAAAAAATTCAGTAA-ATTTT
569 ATTTATTTGGCATTGAATTATATAT-TTTTTCTGAGTATTGTGGCAAAAAATTCAG-AAGAAAAT
** * *
48933 TTTTTTGATTAAGTTTTTAGCCAAAATCATGTACTAACCATCAA-AGTTTTTGGCCTAAAAACAC
632 TTTTCAGA-TAAGTTGTTAACCAAAATCATGTACTAACCAT-AACAGTTTTTGGCCTAAAAACAC
* * *
48997 TTTACGGGGCCCCGACTCAGTTTTGCATGATTTTAGGTAGAAAGACTCCTTGAAACT-TCAATAT
695 ATTACGGGGCCCCGACTCAGTTTGGCATGATTTTAGGCAGAAAGACTCCTTGAAA-TATCAATAT
* * * *
49061 TCATCTAATCGAATCTT-AGGCAAATTGGATTTAAGGATTTGTTTTTACGAGTATCTGAATCTTG
759 TCATCTAATCGAAT-TTCAGCCAAATTGGATTTAAGGACTTGTTTTTACGAGCATCTAAATCTTG
* * * *
49125 TTTCGATTTAATTAAAAATATATTCGTGGGAAAAAATGGAAAAACGATATTAAAAACTTGAAAAA
823 TTTCGATTTAATTAAAAATAAATTC-TGGGAAAAAAAGGAAAAACAATATTAAAAACGTGAAAAA
* * *
49190 CCCTTCAATTTTTTTAGTGTTGAATTATATATTTTTTTCTGACTATTGTAGCAAAAAATTGAGGG
887 CCCTTCAATATTTTTAGTGTTGAATTATATATTTTTTTCCGACTATTGTAGCAAAAAATTGAGGA
*
49255 AAAAATTTTTGGGTTACTTTTGGCAAAA
952 AAAAATTTTCGGGTTACTTTTGGCAAAA
* * *
49283 TTTTATCTGAAATCGTGAAACTAACCATCACGGTT
1 TTTTAGCCGAAATCGTG-TACTAA-CATCACGGTT
49318 TTTTGCCAAA
Statistics
Matches: 874, Mismatches: 108, Indels: 65
0.83 0.10 0.06
Matches are distributed among these distances:
972 2 0.00
973 174 0.20
974 87 0.10
975 183 0.21
976 5 0.01
977 63 0.07
978 67 0.08
979 14 0.02
980 1 0.00
981 42 0.05
982 105 0.12
983 10 0.01
984 4 0.00
985 106 0.12
986 11 0.01
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.35
Consensus pattern (979 bp):
TTTTAGCCGAAATCGTGTACTAACATCACGGTTATTGGGCTAAAAACACGTTACGGAGCCCCGAC
TCAATTTTGCATGATTTTTGGCAGAAAGACTCCTTAAAATATCGATATTCATCGAACCAAATCTC
AAGCACAGTGGATATAAGGATTTGTTTTTACGAGTCTGAATCTTGTTTCGATTTAATTAAAAATT
AATTCGAAAAAATGGAAAAACGATATCAGAAACATGAAAAACCCTCCAATCTTTATGGAGTTGAA
TTATATATTTTTTCTAAGTATTGCGGCAAAAAATTCAGGAAAAAATTTTCGAGTAAGTTTTTAAT
GTACGAAATCATGTATAAACCATCACAATTTTTAACTAAAAACGCGTTACGGAGCCCCGACTCAA
TTTCACATGATTTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGC
CACAGTGGATATACAGACTTGTTTTTACGAGCATCTAAATCTTGTTTAGATTTAATTAAAATAAA
TTCAGAAAAAAATAGAAAAACGATACTAGAAGCATGAAAAACCCGTCAATTTATTTGGCATTGAA
TTATATATTTTTTCTGAGTATTGTGGCAAAAAATTCAGAAGAAAATTTTTCAGATAAGTTGTTAA
CCAAAATCATGTACTAACCATAACAGTTTTTGGCCTAAAAACACATTACGGGGCCCCGACTCAGT
TTGGCATGATTTTAGGCAGAAAGACTCCTTGAAATATCAATATTCATCTAATCGAATTTCAGCCA
AATTGGATTTAAGGACTTGTTTTTACGAGCATCTAAATCTTGTTTCGATTTAATTAAAAATAAAT
TCTGGGAAAAAAAGGAAAAACAATATTAAAAACGTGAAAAACCCTTCAATATTTTTAGTGTTGAA
TTATATATTTTTTTCCGACTATTGTAGCAAAAAATTGAGGAAAAAATTTTCGGGTTACTTTTGGC
AAAA
Found at i:49735 original size:574 final size:573
Alignment explanation
Indices: 48767--50225 Score: 1957
Period size: 574 Copynumber: 2.5 Consensus size: 573
48757 ACATTGGACT
* * * * * * *
48767 TAAGGACTTGTTTTTACGAGCATCTGAATCTTGTTTAGATTTAATTAAAAATAAATTTGGAA-AA
1 TAAGGAATTGATTTTACGAGCATCTGAATTTTGTTTCGATTTAGTT-AAAATTAATTCGGAATAA
* * * * * *
48831 AATAGAAAAACGATACTAGAAGCATGAAAAACCCTTCAAAT-TTTTTTGCATTGAATTATATATA
65 AATGGAAAAACGATATTAGAAGCATGAAAAGCCCATC-AATCTATTTGGCATTGAA-T-TATATA
* *
48895 TTTTTCTGAGTATTGTGGCAAAAAATTCAGTAA-ATTTTTTTTTTGATTAAGTTTTTAGCCAAAA
127 TTTTTCTGAGTATTGTGGCAAAAAATTCAG-AAGA-ATTTTTTTTGAGTAAGTTTTTAGCCAAAA
* * * *
48959 TCATGTACTAACCATCAAAGTTTTTGGCCTAAAAACACTTTACGGGGCCCCGACTCAGTTTTGCA
190 TCATGTACT-ACCATCACAGTTTTTGGGCTAAAAACGCGTTACGGGGCCCCGACTCAGTTTTGCA
* * ** *
49024 TGATTTTAGGTAGAAAGACTCCTTGAAACT-TCAATATTCATCTAATCGAATCTTAGGCAAATTG
254 TGATTTTTGGTAGAAAGACTCCTTGAAA-TATCAATATTCATCTAACCGAATCCCAGCCAAATTG
* * *
49088 GATTTAAGGATTTGTTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAAAAATATATTCGTG
318 GATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAAAAATAAATTCGAG
* *
49153 GGAAAAAATGGAAAAACGATATTAAAAACTTGAAAAACCCTTCAATTTTTTTAGTGTTGAATTAT
383 GCAAAAAATGGAAAAACGATATTAAAAACTTGAAAAACCCTTCAATTTTTTTAGCGTTGAATTAT
** * *
49218 ATATTTTTTTCTGACTATTGTAG-CAAAAAATTGAGGGAAAAA-TTTTTGGGTTACTTTTGGCAA
448 ATA-TTTTTTCTGAAGATTGT-GTCAAAAAATTGA-GGAAAAACTTTTCGGGTCACTTTTGGCAA
* * * *
49281 AATTTTATCTGAAATCGTGAAACTAACCATCACGGTTTTTTGCCAAATTTCAGCCACAGTAAATA
510 AATTTTATCCGAAATCGTG-AACTAACCATCACGGTTTTTGGCCAAATTTAAGCCACAATAAATA
* *
49346 TAAGGAATTGGTTTTACGACCATCTGAATTTTGTTTCGATTTAGTTAAAATTAATTCGGAATAAA
1 TAAGGAATTGATTTTACGAGCATCTGAATTTTGTTTCGATTTAGTTAAAATTAATTCGGAATAAA
*
49411 ATGGAAAAACGATATTAGAAGCAAGAAAAGCCCATCAATCTATTTGGCATTGAATTATATATTTT
66 ATGGAAAAACGATATTAGAAGCATGAAAAGCCCATCAATCTATTTGGCATTGAATTATATATTTT
* ** * * *
49476 TACTGAGTACTGTGGCAAAAAATTCAGAAGAAAATATTTCGAGTAAGTTTTTAGCCGAAATCATG
131 T-CTGAGTATTGTGGCAAAAAATTCAGAAGAATTTTTTTTGAGTAAGTTTTTAGCCAAAATCATG
*** ** * *
49541 TA-T-GTTTCACTCTTTTTGGGCTAAAAATGCGTTACGGGGCCCCAACTCAGTTTTGCATGATTT
195 TACTACCATCACAGTTTTTGGGCTAAAAACGCGTTACGGGGCCCCGACTCAGTTTTGCATGATTT
* * *
49604 TTCGCAGAAAGACTCCTTGAAATATCAATATTCATCTAACCGAATCCCAGCCACATTGGATTTAA
260 TTGGTAGAAAGACTCCTTGAAATATCAATATTCATCTAACCGAATCCCAGCCAAATTGGATTTAA
*
49669 GGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTATAAATAAATTCGAGGCAAAAA
325 GGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAAAAATAAATTCGAGGCAAAAA
* * *
49734 ATGGAAAAACGATATTAGAAGCTTGAAAAACCCTTCAATTTTTTTGGCGTTGAATTATATATTTT
390 ATGGAAAAACGATATTAAAAACTTGAAAAACCCTTCAATTTTTTTAGCGTTGAATTATATATTTT
** * *
49799 TTCTGAAGATTGTGTCAAAAGTTTGAGGAAAAACTTTTCGGGTCAGTTTTTGCAAAATTTTATCC
455 TTCTGAAGATTGTGTCAAAAAATTGAGGAAAAACTTTTCGGGTCACTTTTGGCAAAATTTTATCC
* *
49864 GAAATCGTGTACTAACCGTCACGGTTTTTGGCCAAATTTAAGCCACAATAAATA
520 GAAATCGTGAACTAACCATCACGGTTTTTGGCCAAATTTAAGCCACAATAAATA
*
49918 TAAGGAATTGATTTTACGAGCATCTGAATTTTGTTTCGATTTAGTTAAAATTAATTCGGAATACA
1 TAAGGAATTGATTTTACGAGCATCTGAATTTTGTTTCGATTTAGTTAAAATTAATTCGGAATAAA
* * *
49983 TTGGAAAGACGATATTAGAAGCATGAAAAG-CCAGTCAATCTATTTGGCGTTGAATTATATATTT
66 ATGGAAAAACGATATTAGAAGCATGAAAAGCCCA-TCAATCTATTTGGCATTGAATTATATATTT
* * * *
50047 ATTCTGAGTATTGTGGCAAAAAATTTAGAAGAATTTTTTTTTGGGAAAGTGTTTAGCCAAAATCA
130 -TTCTGAGTATTGTGGCAAAAAATTCAGAAGAA-TTTTTTTTGAGTAAGTTTTTAGCCAAAATCA
* * *
50112 TGTACTAACCATCACGGTTTTTGGGCTGAAAACGCGTTACGGGGTCCCCGACTCAGTTTTGCAAG
193 TGTACT-ACCATCACAGTTTTTGGGCTAAAAACGCGTTACGGGG-CCCCGACTCAGTTTTGCATG
* **
50177 ATTTTTGGTATAAAGACTCCTT-ATAATATTGATATTCATCTAACCGAAT
256 ATTTTTGGTAGAAAGACTCCTTGA-AATATCAATATTCATCTAACCGAAT
50226 TTTCATCGAA
Statistics
Matches: 769, Mismatches: 96, Indels: 32
0.86 0.11 0.04
Matches are distributed among these distances:
571 3 0.00
572 194 0.25
573 89 0.12
574 222 0.29
576 31 0.04
577 102 0.13
578 42 0.05
579 86 0.11
ACGTcount: A:0.34, C:0.14, G:0.17, T:0.36
Consensus pattern (573 bp):
TAAGGAATTGATTTTACGAGCATCTGAATTTTGTTTCGATTTAGTTAAAATTAATTCGGAATAAA
ATGGAAAAACGATATTAGAAGCATGAAAAGCCCATCAATCTATTTGGCATTGAATTATATATTTT
TCTGAGTATTGTGGCAAAAAATTCAGAAGAATTTTTTTTGAGTAAGTTTTTAGCCAAAATCATGT
ACTACCATCACAGTTTTTGGGCTAAAAACGCGTTACGGGGCCCCGACTCAGTTTTGCATGATTTT
TGGTAGAAAGACTCCTTGAAATATCAATATTCATCTAACCGAATCCCAGCCAAATTGGATTTAAG
GATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAAAAATAAATTCGAGGCAAAAAA
TGGAAAAACGATATTAAAAACTTGAAAAACCCTTCAATTTTTTTAGCGTTGAATTATATATTTTT
TCTGAAGATTGTGTCAAAAAATTGAGGAAAAACTTTTCGGGTCACTTTTGGCAAAATTTTATCCG
AAATCGTGAACTAACCATCACGGTTTTTGGCCAAATTTAAGCCACAATAAATA
Done.