Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018179.1 Corchorus olitorius cultivar O-4 contig18212, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88865

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--1057
337
3.2
330
77
10
1100
32
14
17
35
1.90
2717--4578
323
5.7
316
77
8
1747
32
14
17
35
1.90
1100--4578
653
5.3
654
86
4
4670
32
14
17
35
1.90
4644--5996
332
4.2
322
76
11
1251
32
14
16
35
1.90
4644--6001
638
2.1
648
86
4
1881
32
14
17
35
1.90
7879--7928
26
1.9
26
84
8
66
26
12
6
56
1.58
12051--12091
19
2.2
19
86
8
57
34
17
17
31
1.93
22615--22681
31
2.2
31
83
5
82
32
28
16
22
1.95
33118--33146
15
1.9
15
100
0
58
41
10
13
34
1.79
46656--46687
2
16.0
2
93
0
55
50
3
0
46
1.17
60649--60703
27
2.0
27
100
0
110
30
21
3
43
1.70
62294--62364
33
2.2
33
94
2
126
42
12
7
38
1.70
82480--82511
17
1.9
17
93
6
57
9
9
0
81
0.88
87885--87925
2
20.5
2
100
0
82
51
0
0
48
1.00

Tables:   1

The End!