Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01018180.1 Corchorus olitorius cultivar O-4 contig18213, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 44474
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32
Found at i:10955 original size:31 final size:31
Alignment explanation
Indices: 10917--10981 Score: 130
Period size: 31 Copynumber: 2.1 Consensus size: 31
10907 ATATATATAC
10917 AAACTTCAATCTCAATTACTTGACAGGGAAA
1 AAACTTCAATCTCAATTACTTGACAGGGAAA
10948 AAACTTCAATCTCAATTACTTGACAGGGAAA
1 AAACTTCAATCTCAATTACTTGACAGGGAAA
10979 AAA
1 AAA
10982 TCCCTTGGGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.45, C:0.18, G:0.12, T:0.25
Consensus pattern (31 bp):
AAACTTCAATCTCAATTACTTGACAGGGAAA
Found at i:28367 original size:18 final size:20
Alignment explanation
Indices: 28333--28370 Score: 62
Period size: 18 Copynumber: 2.0 Consensus size: 20
28323 GGCGAGGGTT
28333 GCAGAGGAAACCACAGTGAA
1 GCAGAGGAAACCACAGTGAA
28353 GCAGA-GAAA-CACAGTGAA
1 GCAGAGGAAACCACAGTGAA
28371 AACAAGAGAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 9 0.50
19 4 0.22
20 5 0.28
ACGTcount: A:0.47, C:0.18, G:0.29, T:0.05
Consensus pattern (20 bp):
GCAGAGGAAACCACAGTGAA
Found at i:38524 original size:18 final size:18
Alignment explanation
Indices: 38501--38539 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
38491 CGCTTCAGCC
*
38501 GATGATTACAGTAAGTTT
1 GATGATTACAGTAAGTAT
*
38519 GATGATTATAGTAAGTAT
1 GATGATTACAGTAAGTAT
38537 GAT
1 GAT
38540 TCGAAGTATG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.36, C:0.03, G:0.23, T:0.38
Consensus pattern (18 bp):
GATGATTACAGTAAGTAT
Found at i:38964 original size:108 final size:106
Alignment explanation
Indices: 38842--39264 Score: 604
Period size: 108 Copynumber: 3.9 Consensus size: 106
38832 CTAAGTATGG
* *
38842 AGGAGAGAAAAAGCC-TTACTACA-ATCAGAAGCCAGAAGGAGAAGAGAAGAAGCCAAACTATGG
1 AGGAGAGAAGAAGCCATTACTACACACCA-AAGCCAGAAGGAG-A-A-AAGAAGCCAAACTATGG
*
38905 CT-CAAAACCAGACAACTACAAGCCAAAGCCGGAGGAAAAGCCTGA
62 -TGCAAAACCAGACAACTACAAGCCAAAGCCAGAGGAAAAGCCTGA
* * * *
38950 GGGAGAGAACAAGCC-TTATTACACACCAAAACCAGAAGGAGAAAAGAAGCCAAACTATGGTGCA
1 AGGAGAGAAGAAGCCATTACTACACACCAAAGCCAGAAGGAGAAAAGAAGCCAAACTATGGTGCA
* *
39014 AAACCAGACAACTACAAGCCAAAGACAGAGGAAAAGCCCGA
66 AAACCAGACAACTACAAGCCAAAGCCAGAGGAAAAGCCTGA
* *
39055 AGGAGAGAAGAAGCCAAATTACTACAAACCCAAGCCAGAAGGAGAAAAGAAGCCAAACTATGGTG
1 AGGAGAGAAGAAGCC--ATTACTACACACCAAAGCCAGAAGGAGAAAAGAAGCCAAACTATGGTG
*
39120 CAAAACCCGACAACTACAAGCCAAAGCCAGAGGAAAAGCCTGA
64 CAAAACCAGACAACTACAAGCCAAAGCCAGAGGAAAAGCCTGA
*
39163 AGGAGAGAAGAAGCCTTATTATTACACACCAAAGCCAGAAGGAGAAAAGAAGCCAAACTATGGTG
1 AGGAGAGAAGAAGCC--ATTACTACACACCAAAGCCAGAAGGAGAAAAGAAGCCAAACTATGGTG
39228 CAAAACCAGACAACTACAA-CGCAAAGCCAGAGGAAAA
64 CAAAACCAGACAACTACAAGC-CAAAGCCAGAGGAAAA
39265 TGTTTACCCC
Statistics
Matches: 286, Mismatches: 23, Indels: 12
0.89 0.07 0.04
Matches are distributed among these distances:
104 1 0.00
105 70 0.24
106 1 0.00
107 2 0.01
108 209 0.73
109 3 0.01
ACGTcount: A:0.47, C:0.22, G:0.22, T:0.08
Consensus pattern (106 bp):
AGGAGAGAAGAAGCCATTACTACACACCAAAGCCAGAAGGAGAAAAGAAGCCAAACTATGGTGCA
AAACCAGACAACTACAAGCCAAAGCCAGAGGAAAAGCCTGA
Found at i:41117 original size:333 final size:331
Alignment explanation
Indices: 40432--42507 Score: 2651
Period size: 333 Copynumber: 6.2 Consensus size: 331
40422 CATTAAATTT
* * * *
40432 TTTTTGGCGTTAAATTATATGATTTTACTGAGTATTGTGGCAAAAAATTAGGGA-AAAACTTGTT
1 TTTTTGGCATTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATT-GGGAGAAATCTT-TT
*
40496 -GGGTCAGTTTTTTGCAAAATTTTAGCTGAAATCGTGTACTAATCATCACGGTTTTTTGGCTAAA
64 CGGGTCAGTTTTTTGCAAAATTTTAGCTGAAATCGTG---TAACCATCACGG-TTTTTGGCTAAA
* * * *
40560 AACGCGTTTCGGGGCTATGGCTCAGTTTTGCATGATTTTTGGAAGAAAGACTCCTCGAAATATAT
125 AACGCGTTTCGGGGCTCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTCGAAATATCT
* * *
40625 ATATTCATCTAATCAAATCT-T-AGGCACAATGGATTTAAGGATTTATTTTTACCAGTATCTGAA
190 ATATTCATCTAATCAAATCTCTCAGCCACAATGGATTTACGGATTTATTTTTACGAGTATCTGAA
* * * *
40688 TCTTGTTACGATTTAGTTAGAAATAAGTTCAGAAAAAATGGAAAATCGATATTAGAAGCGTGAAA
255 TCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAATGGAAAAACGATATTAGAAGCGTGAAA
40753 AACCCTAAAATA
320 AACCCTAAAATA
* * * *
40765 TTTTTGTCATTGCATTATATGATTTTTCTGAGTATTATGGCAAAAAATTGACGAGAAATCTTTTC
1 TTTTTGGCATTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTG-GGAGAAATCTTTTC
* *
40830 GGGTCAGCTTTTTGCAAAATTTTAGCTGAAATCGTG-AACGATCACGGTTTTTGGCTAAAAACGC
65 GGGTCAGTTTTTTGCAAAATTTTAGCTGAAATCGTGTAACCATCACGGTTTTTGGCTAAAAACGC
* *
40894 GTTTCGGAGCTCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATT
130 GTTTCGGGGCTCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTCGAAATATCTATATT
*
40959 CATCTAATCAAATCTCTCAGCCACAATGGATTTACGGATTTATTTCTACGAGTATCTGAATCTTG
195 CATCTAATCAAATCTCTCAGCCACAATGGATTTACGGATTTATTTTTACGAGTATCTGAATCTTG
** ** * *
41024 TTTCGATTTAATTAGAAATTTATTGTGGCAAAAAATGGAAAAACGATATTAGAAGCATGGAAAAC
260 TTTCGATTTAATTAGAAATAAATT-CAG-AAAAAATGGAAAAACGATATTAGAAGCGTGAAAAAC
41089 CCTAAAATA
323 CCTAAAATA
*
41098 TTTTTGGCATTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGAGAAATATTTTCG
1 TTTTTGGCATTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGAGAAATCTTTTCG
* * * * * * *
41163 GGTCAGTTTTTTGCAAAATTTTAACCGAAATAATGTACTAACCACCACAGTTTTTGGCTGAAAAC
66 GGTCAGTTTTTTGCAAAATTTTAGCTGAAAT--CGT-GTAACCATCACGGTTTTTGGCTAAAAAC
* * * * ** * * *
41228 GCGTTTCGAGGCCCTTACTCAGTTTTGCGTGATTTTTCCCAAAAAGACTCCTAGAAATATCTGTA
128 GCGTTTCGGGGCTCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTCGAAATATCTATA
* * * * * * *
41293 CTCATCTAACCAAATCTCTCAGCCACATTGGATTTACAGATTTGTTTTTACGAGCATCTGGATCT
193 TTCATCTAATCAAATCTCTCAGCCACAATGGATTTACGGATTTATTTTTACGAGTATCTGAATCT
*
41358 TGTTTCGATTTAAATAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAA
258 TGTTTCGATTTAATTAGAAATAAATTCAG-AAAAAATGGAAAAACGATATTAGAAGCGTGAAAAA
**
41423 CTTTAAAAGT-
322 CCCTAAAA-TA
* * * *
41433 TTTTTGGCATTGAATTATATGATTATACTGAGTAATGTGGCAAAAAATTGGGGAAAAAT-TTTTA
1 TTTTTGGCATTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATT-GGGAGAAATCTTTT-
* * ** *
41497 AGGGTCGGTTTTTTTGCAAAATTTTAGCTGAAATCGTGT-A-TGTTACGGTTTTTGGCTAAAAAC
64 CGGGTCAG-TTTTTTGCAAAATTTTAGCTGAAATCGTGTAACCATCACGGTTTTTGGCTAAAAAC
** * *
41560 ATGTTTCGGGGCTCT-AGCTCAGTTTTGCATGATTTTTTGGAAGAAAGACTCCTCGAAATATATA
128 GCGTTTCGGGGCTCTGA-CTCAGTTTTGCATGA-TTTTTGGCAGAAAGACTCCTCGAAATATCTA
* * *
41624 TATTCATCTAATTAAATCT-T-AGCCACAATGGATTTAAGGATTTATTTTTACCAGTATCTGAAT
191 TATTCATCTAATCAAATCTCTCAGCCACAATGGATTTACGGATTTATTTTTACGAGTATCTGAAT
* * *
41687 CTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAATAGATAATCGATATTAGAAGCGTGAAAA
256 CTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAATGGAAAAACGATATTAGAAGCGTGAAAA
41752 ACCCTAAAATA
321 ACCCTAAAATA
* * * *
41763 TTTTTGGCATTGAATTATATTG-TTTTTGTGAGTATTATGGCAAAAGATTGGGGGAAATCTTTTC
1 TTTTTGGCATTGAATTATA-TGATTTTTCTGAGTATTGTGGCAAAAAATTGGGAGAAATCTTTTC
* * * * *
41827 GGGTAAGCTTTTTGCAAAATTTTAGCTGAAATCGTGTATTAACCATTACAGTTTTTGGCTGAAAA
65 GGGTCAGTTTTTTGCAAAATTTTAGCTGAAATCGTG---TAACCATCACGGTTTTTGGCTAAAAA
* * *
41892 CGCGTTTCGGGGCCCTGACTCAATTTTGCATGATTTTTGGCAGAAAGACTTCTCGAAATATCTAT
127 CGCGTTTCGGGGCTCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTCGAAATATCTAT
* * * * * *
41957 ATTCATCTTATCAAATCTATCAGCCACAATGCATTTACAGATTTGTTTTTACGAGCATCTGAATC
192 ATTCATCTAATCAAATCTCTCAGCCACAATGGATTTACGGATTTATTTTTACGAGTATCTGAATC
42022 TTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAA
257 TTGTTTCGATTTAATTAGAAATAAATTCAG-AAAAAATGGAAAAACGATATTAGAAGCGTGAAAA
*** *
42087 ATATTAAAATT
321 ACCCTAAAATA
* *
42098 TTTTTGGCGTTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGG-GAAAATATTTTC
1 TTTTTGGCATTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGAG-AAATCTTTTC
* * *
42162 GGGTCAGTTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGATTTTTGGCTGAAAA
65 GGGTCAGTTTTTTGCAAAATTTTAGCTGAAATCGTG---TAACCATCACGGTTTTTGGCTAAAAA
* *
42227 CGCGTTTC--GGC-CTGACACAGTTTTGCAATGATTTTTGGCAGAAAGACTTCTCGAAATATCTA
127 CGCGTTTCGGGGCTCTGACTCAGTTTTGC-ATGATTTTTGGCAGAAAGACTCCTCGAAATATCTA
*
42289 TATTCATCTAATCAAATCTCTCAGCCACATTGGATTTACGGATTTATTTTTACGAGTATCTGAAT
191 TATTCATCTAATCAAATCTCTCAGCCACAATGGATTTACGGATTTATTTTTACGAGTATCTGAAT
*
42354 CTTGTTTCGATTTAATTAGAAATAAATTCAGATAAAAATGGGAAAAA-GATATTAGAAGCGTAAA
256 CTTGTTTCGATTTAATTAGAAATAAATTCAGA-AAAAAT-GGAAAAACGATATTAGAAGCGTGAA
** *
42418 AAACATTAAAATTT
319 AAACCCTAAAA-TA
** * * * * * *
42432 TTTTTAACGTTGAATTATATAATTTTACCGAGTATTTTGGCAAAAAATTGTGGA-AAAACTTTTC
1 TTTTTGGCATTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTG-GGAGAAATCTTTTC
42496 GGGTCAGTTTTT
65 GGGTCAGTTTTT
42508 GGCATTGAAT
Statistics
Matches: 1519, Mismatches: 187, Indels: 73
0.85 0.11 0.04
Matches are distributed among these distances:
328 28 0.02
329 104 0.07
330 92 0.06
331 132 0.09
332 146 0.10
333 382 0.25
334 189 0.12
335 252 0.17
336 171 0.11
337 23 0.02
ACGTcount: A:0.33, C:0.13, G:0.18, T:0.36
Consensus pattern (331 bp):
TTTTTGGCATTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGAGAAATCTTTTCG
GGTCAGTTTTTTGCAAAATTTTAGCTGAAATCGTGTAACCATCACGGTTTTTGGCTAAAAACGCG
TTTCGGGGCTCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTCGAAATATCTATATTC
ATCTAATCAAATCTCTCAGCCACAATGGATTTACGGATTTATTTTTACGAGTATCTGAATCTTGT
TTCGATTTAATTAGAAATAAATTCAGAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACCCT
AAAATA
Found at i:41767 original size:665 final size:660
Alignment explanation
Indices: 40432--42507 Score: 2787
Period size: 665 Copynumber: 3.1 Consensus size: 660
40422 CATTAAATTT
* *
40432 TTTTTGGCGTTAAATTATATGATTTTACTGAGTATTGTGGCAAAAAATTAGGGAAAAACTTGTT-
1 TTTTTGGCATTGAATTATATGATTTTACTGAGTATTGTGGCAAAAAATT-GGGAAAAACTT-TTC
* * *
40496 GGGTCAGTTTTTTGCAAAATTTTAGCTGAAATCGTGTACTAATCATCACGGTTTTTTGGCTAAAA
64 GGGTCAGTTTTTTGCAAAATTTTAGCTGAAATCGTGTACTAACCATCACAG-TTTTTGGCTGAAA
** * * *
40561 ACGCGTTTCGGGGCTATGGCTCAGTTTTGCATGATTTTTGGAAGAAAGACTCCTCGAAATATATA
128 ACGCGTTTCGGGGCCCTGACTCAGTTTTGCATGATTTTTGCAA-AAAGACTCCTCGAAATATCTA
* * * *
40626 TATTCATCTAATCAAATCTT-AGGCACAATGGATTTA-AGGATTTATTTTTACCAGTATCTGAAT
192 TATTCATCTAATCAAATCTTCAGCCACAATGGATTTACA-GATTTGTTTTTACGAGCATCTGAAT
* * * *
40689 CTTGTTACGATTTAGTTAGAAATAAGTTCAG-AAAAAATGGAAAATCGATATTAGAAGCGTGAAA
256 CTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAA
** * * * **
40753 AACCCTAAAATATTTTTGTCATTGCATTATATGATTTTTCTGAGTATTATGGCAAAAAATTGACG
321 AACTTTAAAAT-TTTTTGGCATTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGG
* * * * *
40818 AGAAATCTTTTCGGGTCAGCTTTTTGCAAAATTTTAGCTGAAATCGTGAACGATCACGGTTTTTG
385 AAAAATATTTTCGGGTCAGTTTTTTGCAAAATTTTAGCTGAAATCGTGTATG-TCACGGTTTTTG
*
40883 GCTAAAAACGCGTTTCGGAGCTCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTTCTCGAA
449 GCTAAAAACGCGTTTCGGGGCTCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTTCTCGAA
*
40948 ATATCTATATTCATCTAATCAAATCTCTCAGCCACAATGGATTTACGGATTTATTTCTACGAGTA
514 ATATCTATATTCATCTAATCAAATCTCTCAGCCACAATGGATTTACGGATTTATTTTTACGAGTA
** **
41013 TCTGAATCTTGTTTCGATTTAATTAGAAATTTATTGTGGCAAAAAATGGAAAAACGATATTAGAA
579 TCTGAATCTTGTTTCGATTTAATTAGAAATAAATT-CAG-AAAAAATGG-AAAACGATATTAGAA
* *
41078 GCATGGAAAACCCTAAAATA
641 GCGTGAAAAACCCTAAAATA
*
41098 TTTTTGGCATTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGAGAAATA-TTTTC
1 TTTTTGGCATTGAATTATATGATTTTACTGAGTATTGTGGCAAAAAATTGGGA-AAA-ACTTTTC
* * ** *
41162 GGGTCAGTTTTTTGCAAAATTTTAACCGAAATAATGTACTAACCACCACAGTTTTTGGCTGAAAA
64 GGGTCAGTTTTTTGCAAAATTTTAGCTGAAATCGTGTACTAACCATCACAGTTTTTGGCTGAAAA
* * * * * *
41227 CGCGTTTCGAGGCCCTTACTCAGTTTTGCGTGATTTTTCCCAAAAAGACTCCTAGAAATATCTGT
129 CGCGTTTCGGGGCCCTGACTCAGTTTTGCATGATTTTT-GCAAAAAGACTCCTCGAAATATCTAT
* * * *
41292 ACTCATCTAACCAAATCTCTCAGCCACATTGGATTTACAGATTTGTTTTTACGAGCATCTGGATC
193 ATTCATCTAATCAAATCT-TCAGCCACAATGGATTTACAGATTTGTTTTTACGAGCATCTGAATC
*
41357 TTGTTTCGATTTAAATAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAA
257 TTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAA
* * *
41422 ACTTTAAAAGTTTTTTGGCATTGAATTATATGATTATACTGAGTAATGTGGCAAAAAATTGGGGA
322 ACTTTAAAA-TTTTTTGGCATTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGA
* * *
41487 AAAAT-TTTTAAGGGTCGGTTTTTTTGCAAAATTTTAGCTGAAATCGTGTATGTTACGGTTTTTG
386 AAAATATTTT-CGGGTCAG-TTTTTTGCAAAATTTTAGCTGAAATCGTGTATGTCACGGTTTTTG
** * *
41551 GCTAAAAACATGTTTCGGGGCTCT-AGCTCAGTTTTGCATGATTTTTTGGAAGAAAGACTCCTCG
449 GCTAAAAACGCGTTTCGGGGCTCTGA-CTCAGTTTTGCATGA-TTTTTGGCAGAAAGACTTCTCG
* * * *
41615 AAATATATATATTCATCTAATTAAATCT-T-AGCCACAATGGATTTAAGGATTTATTTTTACCAG
512 AAATATCTATATTCATCTAATCAAATCTCTCAGCCACAATGGATTTACGGATTTATTTTTACGAG
* *
41678 TATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAATAGATAATCGATATTAGAA
577 TATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAATGGA-AAACGATATTAGAA
41743 GCGTGAAAAACCCTAAAATA
641 GCGTGAAAAACCCTAAAATA
** * * * *
41763 TTTTTGGCATTGAATTATATTG-TTTTTGTGAGTATTATGGCAAAAGATTGGGGGAAATCTTTTC
1 TTTTTGGCATTGAATTATA-TGATTTTACTGAGTATTGTGGCAAAAAATT-GGGAAAAACTTTTC
* * * *
41827 GGGTAAGCTTTTTGCAAAATTTTAGCTGAAATCGTGTATTAACCATTACAGTTTTTGGCTGAAAA
64 GGGTCAGTTTTTTGCAAAATTTTAGCTGAAATCGTGTACTAACCATCACAGTTTTTGGCTGAAAA
* * *
41892 CGCGTTTCGGGGCCCTGACTCAATTTTGCATGATTTTTGGCAGAAAGACTTCTCGAAATATCTAT
129 CGCGTTTCGGGGCCCTGACTCAGTTTTGCATGATTTTT-GCAAAAAGACTCCTCGAAATATCTAT
* *
41957 ATTCATCTTATCAAATCTATCAGCCACAATGCATTTACAGATTTGTTTTTACGAGCATCTGAATC
193 ATTCATCTAATCAAATCT-TCAGCCACAATGGATTTACAGATTTGTTTTTACGAGCATCTGAATC
42022 TTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAA
257 TTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAA
*
42087 A-TATTAAAATTTTTTTGGCGTTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGG
322 ACT-TTAAAA-TTTTTTGGCATTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGG
* * *
42151 -AAAATATTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGATT
385 AAAAATATTTTCGGGTCAGTTTTTTGCAAAATTTTAGCTGAAATCGTGTA-T----GTCACGGTT
* *
42215 TTTGGCTGAAAACGCGTTTC--GGC-CTGACACAGTTTTGCAATGATTTTTGGCAGAAAGACTTC
445 TTTGGCTAAAAACGCGTTTCGGGGCTCTGACTCAGTTTTGC-ATGATTTTTGGCAGAAAGACTTC
*
42277 TCGAAATATCTATATTCATCTAATCAAATCTCTCAGCCACATTGGATTTACGGATTTATTTTTAC
509 TCGAAATATCTATATTCATCTAATCAAATCTCTCAGCCACAATGGATTTACGGATTTATTTTTAC
*
42342 GAGTATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGATAAAAATGGGAAAAAGATATT
574 GAGTATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGA-AAAAAT-GGAAAACGATATT
* ** *
42407 AGAAGCGTAAAAAACATTAAAATTT
637 AGAAGCGTGAAAAACCCTAAAA-TA
** * * * *
42432 TTTTTAACGTTGAATTATATAATTTTACCGAGTATTTTGGCAAAAAATTGTGGAAAAACTTTTCG
1 TTTTTGGCATTGAATTATATGATTTTACTGAGTATTGTGGCAAAAAATTG-GGAAAAACTTTTCG
42497 GGTCAGTTTTT
65 GGTCAGTTTTT
42508 GGCATTGAAT
Statistics
Matches: 1233, Mismatches: 144, Indels: 63
0.86 0.10 0.04
Matches are distributed among these distances:
663 30 0.02
664 14 0.01
665 528 0.43
666 113 0.09
667 206 0.17
668 203 0.16
669 139 0.11
ACGTcount: A:0.33, C:0.13, G:0.18, T:0.36
Consensus pattern (660 bp):
TTTTTGGCATTGAATTATATGATTTTACTGAGTATTGTGGCAAAAAATTGGGAAAAACTTTTCGG
GTCAGTTTTTTGCAAAATTTTAGCTGAAATCGTGTACTAACCATCACAGTTTTTGGCTGAAAACG
CGTTTCGGGGCCCTGACTCAGTTTTGCATGATTTTTGCAAAAAGACTCCTCGAAATATCTATATT
CATCTAATCAAATCTTCAGCCACAATGGATTTACAGATTTGTTTTTACGAGCATCTGAATCTTGT
TTCGATTTAATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACTT
TAAAATTTTTTGGCATTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGAAAAAT
ATTTTCGGGTCAGTTTTTTGCAAAATTTTAGCTGAAATCGTGTATGTCACGGTTTTTGGCTAAAA
ACGCGTTTCGGGGCTCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTTCTCGAAATATCTA
TATTCATCTAATCAAATCTCTCAGCCACAATGGATTTACGGATTTATTTTTACGAGTATCTGAAT
CTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAATGGAAAACGATATTAGAAGCGTGAAAAA
CCCTAAAATA
Found at i:42581 original size:246 final size:247
Alignment explanation
Indices: 42289--42754 Score: 674
Period size: 246 Copynumber: 1.9 Consensus size: 247
42279 GAAATATCTA
* *
42289 TATTCATCTAATCAAATCTCTCAGCCACATTGGATTTACGGATTTATTTTTACGAGTATCTGAAT
1 TATTCATCTAATCAAATCTCTCAGCCACAATGGAATTACGGATTTATTTTTACGAGTATCTGAAT
* *
42354 CTTGTTTCGATTTAATTAGAAATAAATT-CAG-ATAAAAATGGGAAAAA-GATATTAGAAGCGTA
66 CTTGTTTCGATTTAATTAGAAATAAATTGCAGCA-AAAAATGGAAAAAACGATATTAGAAGCATA
** *
42416 AAAAACAT-TAAAAT-TTTTTTTAACGTTGAATTATATAATTTTACCGAGTATTTTGGCAAAAAA
130 AAAAAC-TCTAAAATATTTTTGGAA--TTGAATTATATAATTTTACCGAGTATTGTGGCAAAAAA
* *
42479 TTGTG-GAAAAACTTTTCGGGTCAGTTTTTGGCATTGAATTATATGATTTTTTTGAG
192 TCGCGAG-AAAACTTTTCGGGTCAGTTTTTGGCATTGAATTATATGATTTTTTTGAG
*
42535 TATTCATCTAATCAAATCTCTCAGCCACAATGGAATTACGGATTTATTTTTACGATTATCTGAAT
1 TATTCATCTAATCAAATCTCTCAGCCACAATGGAATTACGGATTTATTTTTACGAGTATCTGAAT
** ** *
42600 CTTGTTTCGATTTAATTAGAAATTTATTGTGGCAAAAAATGGAAAAAACGATATTAGAAGCATGA
66 CTTGTTTCGATTTAATTAGAAATAAATTGCAGCAAAAAATGGAAAAAACGATATTAGAAGCATAA
* * *
42665 AAAACTCTAAAATATTTTTGGAATTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATCGC
131 AAAACTCTAAAATATTTTTGGAATTGAATTATATAATTTTACCGAGTATTGTGGCAAAAAATCGC
*
42730 GAGAAATCTTTTCGGGTCAGTTTTT
196 GAGAAAACTTTTCGGGTCAGTTTTT
42755 TGTAAAATTT
Statistics
Matches: 195, Mismatches: 19, Indels: 11
0.87 0.08 0.05
Matches are distributed among these distances:
246 88 0.45
247 73 0.37
248 27 0.14
249 7 0.04
ACGTcount: A:0.35, C:0.11, G:0.16, T:0.38
Consensus pattern (247 bp):
TATTCATCTAATCAAATCTCTCAGCCACAATGGAATTACGGATTTATTTTTACGAGTATCTGAAT
CTTGTTTCGATTTAATTAGAAATAAATTGCAGCAAAAAATGGAAAAAACGATATTAGAAGCATAA
AAAACTCTAAAATATTTTTGGAATTGAATTATATAATTTTACCGAGTATTGTGGCAAAAAATCGC
GAGAAAACTTTTCGGGTCAGTTTTTGGCATTGAATTATATGATTTTTTTGAG
Found at i:43061 original size:581 final size:580
Alignment explanation
Indices: 41956--43089 Score: 1715
Period size: 581 Copynumber: 2.0 Consensus size: 580
41946 GAAATATCTA
* * *
41956 TATTCATCTTATCAAATCTATCAGCCACAATGCATTTACAGATTTGTTTTTACGAGCATCTGAAT
1 TATTCATCTAATCAAATCTATCAGCCACAATGCAATTACAGATTTATTTTTACGAGCATCTGAAT
*
42021 CTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAA
66 CTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCATGAAA
* * ** * *
42086 AATATTAAAATTTTTTTGGCGTTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGG
131 AATACTAAAATATTTTTGGAATTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATCGGAG
42151 AAAATATTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGATTT
196 AAAATATTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGATTT
* *
42216 TTGGCTGAAAACGCGTTTCGGCCTGACACAGTTTTGCAATGATTTTTGGCAGAAAGACTTCTCGA
261 TTGGCTGAAAACGCGTTTCGGCCTGACACAGTTTTGCAATAATTTTTGGCAGAAAGACTCCTCGA
* * * *
42281 AATATCTATATTCATCTAATCAAATCTCTCAGCCACATTGGATTTACGGATTTATTTTTACGAGT
326 AATATCTATATTCATCTAACCAAATCTCTCAGCCACACTGGATTTACAGATTTATTTTTACGAGC
*
42346 ATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGATAAAAATGGGAAAAAGATATTAGAA
391 ATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATGGGAAAAAGATATTAGAA
* * *
42411 GCGTAAAAAACATTAAAATTTTTTTTAACGTTGAATTATATAATTTTACCGAGTATTTTGGCAAA
456 GCGTAAAAAACATTAAAATTTTTTATAACGTTGAATTATATAATTTTACCGAGCATTGTGGCAAA
*
42476 AAA-TTGTGGAAAAACTTTTCGGGTCAGTTTTTGGCATTGAATTATATGATTTTTTTGAG
521 AAATTTGGGGAAAAACTTTTCGGGTCAGTTTTTGGCATTGAATTATATGATTTTTTTGAG
* * * **
42535 TATTCATCTAATCAAATCTCTCAGCCACAATGGAATTACGGATTTATTTTTACGATTATCTGAAT
1 TATTCATCTAATCAAATCTATCAGCCACAATGCAATTACAGATTTATTTTTACGAGCATCTGAAT
** ** *
42600 CTTGTTTCGATTTAATTAGAAATTTATTGTGGCAAAAAATGGAAAAAACGATATTAGAAGCATGA
66 CTTGTTTCGATTTAATTAGAAATAAATT-CAGAAAAAAATGG-AAAAACGATATTAGAAGCATGA
42665 AAAACT-CTAAAATATTTTTGGAATTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATCG
129 AAAA-TACTAAAATATTTTTGGAATTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATCG
* * *
42729 CGAG-AAATCTTTTCGGGTCAGTTTTTTGTAAAATTTTAGTCGAAATCGTGTACTAACCATCACG
193 -GAGAAAATATTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACG
* ** *
42793 GTTTTTGGCTGAAAACGCGTTTCGGGGATTTGACTCAGTTTTGC-ATAATTTTTGGCAGAAAGAC
257 ATTTTTGGCTGAAAACGCGTTTC--GG-CCTGACACAGTTTTGCAATAATTTTTGGCAGAAAGAC
* *
42857 TCCTCGAAATATCTGTATTCATCTAACCAAATCTCTCAGCCACACTGGATTTACAGATTTGTTTT
319 TCCTCGAAATATCTATATTCATCTAACCAAATCTCTCAGCCACACTGGATTTACAGATTTATTTT
42922 TACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAAT-GGAAAAACGA
384 TACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATGGGAAAAA-GA
* * ** * *
42986 TATTAGAAGCGTGAAAAATATT-AAATTTTTTATGGCGTTGAATTATATGATTTTACTGAGCATT
448 TATTAGAAGCGTAAAAAACATTAAAATTTTTTATAACGTTGAATTATATAATTTTACCGAGCATT
**
43050 GTGGC-AAAAATTTGGGGAAAATTTTTTCGGGTCAGTTTTT
513 GTGGCAAAAAATTTGGGGAAAAACTTTTCGGGTCAGTTTTT
43090 TGTAAAATTT
Statistics
Matches: 498, Mismatches: 48, Indels: 15
0.89 0.09 0.03
Matches are distributed among these distances:
579 83 0.17
580 10 0.02
581 162 0.33
582 76 0.15
583 154 0.31
584 13 0.03
ACGTcount: A:0.34, C:0.13, G:0.17, T:0.37
Consensus pattern (580 bp):
TATTCATCTAATCAAATCTATCAGCCACAATGCAATTACAGATTTATTTTTACGAGCATCTGAAT
CTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCATGAAA
AATACTAAAATATTTTTGGAATTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATCGGAG
AAAATATTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGATTT
TTGGCTGAAAACGCGTTTCGGCCTGACACAGTTTTGCAATAATTTTTGGCAGAAAGACTCCTCGA
AATATCTATATTCATCTAACCAAATCTCTCAGCCACACTGGATTTACAGATTTATTTTTACGAGC
ATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATGGGAAAAAGATATTAGAA
GCGTAAAAAACATTAAAATTTTTTATAACGTTGAATTATATAATTTTACCGAGCATTGTGGCAAA
AAATTTGGGGAAAAACTTTTCGGGTCAGTTTTTGGCATTGAATTATATGATTTTTTTGAG
Found at i:44134 original size:335 final size:335
Alignment explanation
Indices: 42534--44474 Score: 2728
Period size: 335 Copynumber: 5.8 Consensus size: 335
42524 ATTTTTTTGA
* * * **
42534 GTATTCATCTAATCAAATCTCTCAGCCACAATGGAATTACGGATTTATTTTTACGATTATCTGAA
1 GTATTCATCTAACCAAATCTCTCAGCCACAATGGATTTACAGATTTATTTTTACGAGCATCTGAA
** ** * *
42599 TCTTGTTTCGATTTAATTAGAAATTTATTGTGGCAAAAAATGGAAAAAACGATATTAGAAGCATG
66 TCTTGTTTCGATTTAATTAGAAATAAATT-CAGAAAAAAATGG-AAAAACGATATTAGAAGCGTG
* *
42664 AAAAAC-TCTAAAATATTTTTGGAATTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAA-T
129 AAAAACAT-TAAAATATTTTTGGCATTGAATTATATGATTTTACTGAGTATTGTGGCAAAAAATT
* * * * *
42727 CGCGAGAAATCTTTTCGGGTCAGTTTTTTGTAAAATTTTAGTCGAAATCGTGTACTAACCATCAC
193 GGGGA-AAATCTTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCGAAATCATGTACTAACCATCAC
*** *
42792 GGTTTTTGGCTGAAAACGCGTTTCGGGGATTTGACTCAGTTTTGCATAATTTTTGGCAGAAAGAC
257 GGTTTTTGGCTGAAAACGCGTTTCGGGGCCCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGAC
42857 TCCTCGAAATATCT
322 TCCTCGAAATATCT
* *
42871 GTATTCATCTAACCAAATCTCTCAGCCACACTGGATTTACAGATTTGTTTTTACGAGCATCTGAA
1 GTATTCATCTAACCAAATCTCTCAGCCACAATGGATTTACAGATTTATTTTTACGAGCATCTGAA
42936 TCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAA
66 TCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAA
* * * * *
43001 AAATATT-AAATTTTTTATGGCGTTGAATTATATGATTTTACTGAGCATTGTGGCAAAAATTTGG
131 AAACATTAAAATATTTT-TGGCATTGAATTATATGATTTTACTGAGTATTGTGGCAAAAAATTGG
* * *
43065 GGAAAATTTTTTCGGGTCAGTTTTTTGTAAAATTTTAGCTGAAATC--G---T-A-CAT---GGT
195 GGAAAATCTTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCGAAATCATGTACTAACCATCACGGT
* ** * *
43120 TTTTGGCTAAAAACGCGTTTCGGGGATCTGTCTCAGTTTTGCATGATTTTTGGAAGAAAGACTCC
260 TTTTGGCTGAAAACGCGTTTCGGGGCCCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCC
* *
43185 TCGAAGTATAT
325 TCGAAATATCT
* * * *
43196 ATATTCATCTAATCAAATCT-T-AGCCACAATGGATTTA-AGAATTTATTTTTGCCG-GTATCTG
1 GTATTCATCTAACCAAATCTCTCAGCCACAATGGATTTACAG-ATTTATTTTT-ACGAGCATCTG
*
43257 AATCTTGTTTCGATTTAATTAG----AAATT---AAAAAAATGGAAAATCGATATTAGAAGCGTG
64 AATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTG
** * * *
43315 AAAAACCCTAAAATATTTTTGGCATTGACTTATATGATTTTACTAAGTATTATGGCAAAAAAATT
129 AAAAACATTAAAATATTTTTGGCATTGAATTATATGATTTTACTGAGTATTGTGGC-AAAAAATT
* * *
43380 GGGGAAAATCTTTTCGGGTCAGCTTTTTGCAAAATTTTAGCCGAAATCATATACTAACCATCACA
193 GGGGAAAATCTTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCGAAATCATGTACTAACCATCACG
* *
43445 GTTTTTGGCTGAAAACGCGTTTCGGTGCCTTGACTCAGTTTTGCATGATTTTTGGCAGAAAGACT
258 GTTTTTGGCTGAAAACGCGTTTCGGGGCCCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGACT
*
43510 TCTCGAAATATCT
323 CCTCGAAATATCT
* * * * * *
43523 ATATTCATCTAATCAAATCTCTCAGCCACAATGCATTAACGGATTTATTTTTACGAGTATCTGAA
1 GTATTCATCTAACCAAATCTCTCAGCCACAATGGATTTACAGATTTATTTTTACGAGCATCTGAA
** ** * * *
43588 TCTTGTTTCGATTTAATTAGAAATTTATTGTGGCAAAAAATTGAAAAAACGATATTAGAAGCATG
66 TCTTGTTTCGATTTAATTAGAAATAAATT-CAG-AAAAAAATGGAAAAACGATATTAGAAGCGTG
* ** * * *
43653 GAAAACCCTAACATATTTTTGGCATTGAATTATATGATTTTTCTGAGTATTGTGGTAAAAAATTG
129 AAAAACATTAAAATATTTTTGGCATTGAATTATATGATTTTACTGAGTATTGTGGCAAAAAATTG
* * *
43718 GGTG-AAATCTTTTCGGGTCAGTTTTCTGCAAAATTTTAGCCTAAATCGTGTACTAACCATCACG
194 GG-GAAAATCTTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCGAAATCATGTACTAACCATCACG
* *
43782 GTTTTTGGCTAAAAACGCGTTTCGGGGCCCTAACTCAGTTTTGCATGATTTTTGGCAGAAAGACT
258 GTTTTTGGCTGAAAACGCGTTTCGGGGCCCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGACT
43847 CCTCGAAATATCT
323 CCTCGAAATATCT
* *
43860 GTATTCATCTAACCAAATCTCTCAGCCACACTGGATTTACAGATTTGTTTTTACGAGCATCTGAA
1 GTATTCATCTAACCAAATCTCTCAGCCACAATGGATTTACAGATTTATTTTTACGAGCATCTGAA
43925 TCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAA
66 TCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAA
* *
43990 AAACATTAAAATTTTTTTGGCGTTGAATTATATGATTTTACTGAGTATTGTGGCAAAAAATTGGG
131 AAACATTAAAATATTTTTGGCATTGAATTATATGATTTTACTGAGTATTGTGGCAAAAAATTGGG
*
44055 GAAAATCTTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCGAAAGCATGTACTAACCATCACGGTT
196 GAAAATCTTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCGAAATCATGTACTAACCATCACGGTT
*
44120 TTTGGCTGAAAACGCGTTTCGGGGCCCTGACTCAGTTTTGCATGATTTTTGGCAAAAAGACTCCT
261 TTTGGCTGAAAACGCGTTTCGGGGCCCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCT
44185 CGAAATATCT
326 CGAAATATCT
* * *
44195 GTATTCATCTAACCAAATCTCTCAGCCACATTGGATTTACAGATTTGTTTTTACGAGCATCTGGA
1 GTATTCATCTAACCAAATCTCTCAGCCACAATGGATTTACAGATTTATTTTTACGAGCATCTGAA
*
44260 TCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATGGAAAAAACGATATTAGAAGCGTGG
66 TCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATGG-AAAAACGATATTAGAAGCGTGA
** *
44325 AAAACATTAAAATATTTTTTAACGTTGAATTATATGATTTTACTGAGTATTGTGGC-AAAAATTG
130 AAAACATTAAAATA-TTTTTGGCATTGAATTATATGATTTTACTGAGTATTGTGGCAAAAAATTG
* * *
44389 GGGAAAATCTTTTCGGGTCAGTTTTTTGTAAAATTTTAGCCGAAGTCATTTACTAACCATCACGG
194 GGGAAAATCTTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCGAAATCATGTACTAACCATCACGG
44454 TTTTTGGCTGAAAACGCGTTT
259 TTTTTGGCTGAAAACGCGTTT
Statistics
Matches: 1437, Mismatches: 133, Indels: 69
0.88 0.08 0.04
Matches are distributed among these distances:
316 68 0.05
317 59 0.04
319 5 0.00
322 3 0.00
323 53 0.04
324 6 0.00
325 90 0.06
327 88 0.06
328 6 0.00
329 54 0.04
330 2 0.00
333 4 0.00
334 9 0.01
335 427 0.30
336 140 0.10
337 346 0.24
338 77 0.05
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.35
Consensus pattern (335 bp):
GTATTCATCTAACCAAATCTCTCAGCCACAATGGATTTACAGATTTATTTTTACGAGCATCTGAA
TCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAA
AAACATTAAAATATTTTTGGCATTGAATTATATGATTTTACTGAGTATTGTGGCAAAAAATTGGG
GAAAATCTTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCGAAATCATGTACTAACCATCACGGTT
TTTGGCTGAAAACGCGTTTCGGGGCCCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCT
CGAAATATCT
Done.