Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01018181.1 Corchorus olitorius cultivar O-4 contig18214, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 6182
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.35
Found at i:2166 original size:332 final size:336
Alignment explanation
Indices: 1--4177 Score: 5545
Period size: 332 Copynumber: 12.6 Consensus size: 336
** * *
1 AGAAAAAAATGGAAAAAACGATATTAGAAGCGTGAAAAACATTAAAATTTTTTTTGGCGTTGAAT
1 AGAAAAAAATGGAAAAAACGATATTAGAAGCGTGAAAAACCCTAAAA-TATTTTTGGCATTGAAT
* * * *
66 TATATGATTTTTAATGAGTATTGTGGCAAAAAATT-GGGGAAAT-TTTTAAAGGATCGGTTTTTT
65 TATATGATTTTT-CTGAGTATTGTGGCAAAAAATTGGGGGAAATCTTTT--CGGGTCAG-TTTTT
* * *
129 TGCAAAATTTTAGCTGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTC-GGG
126 TGCAAAATTTTAGCCGAAATCATGTACTAACCATCACGGTTTTTGGCTGAAAACGCGTTTCGGGG
** * * *
193 TTCTGGCTCAGTTTTGCATGATTTTTGGAAGAAAGACTCCTCGAAATATATATATTCATCTAATC
191 CCCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTCGAAATATCTATATTCATCTAATC
* ** ** *
258 AAATCT-T-AGACACAATGGATTTATGGATTTATTTTTACCTGTATCTGAATCTTGTTTCGATTT
256 AAATCTCTCAGCCACAATGGATTTACAGATTTATTTTTACGAGCATCTGAATCTTGTTTCGATTT
321 AATTAGAAATAAATTC
321 AATTAGAAATAAATTC
* * *
337 AG-AAAAAATGG-AAAATCGATATTAGAAGCGTGAAAAACCCCAAAATATTTTTGGCATTTAATT
1 AGAAAAAAATGGAAAAAACGATATTAGAAGCGTGAAAAACCCTAAAATATTTTTGGCATTGAATT
* * *
400 ATATGATTTTACTGAGTATTGTGGCAAAAAATTGGGGAAAATCTTTTCGGGTCAGTTTTTTGTAA
66 ATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGGAAATCTTTTCGGGTCAGTTTTTTGCAA
* *
465 TATTTTAGCCG-AA--A-G-------CATCACGGTTTTTGGCTGAAAACGCATTTCGGGGCCCTG
131 AATTTTAGCCGAAATCATGTACTAACCATCACGGTTTTTGGCTGAAAACGCGTTTCGGGGCCCTG
* ** *
519 ACTCAGTTTTGCATGATTTTTGGCAGAAAGTCTTTTCGAAATATCTATTTTCATCTAATCAAATC
196 ACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTCGAAATATCTATATTCATCTAATCAAATC
* *
584 TCTCAGCCACAATGGATTTACGGATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTA
261 TCTCAGCCACAATGGATTTACAGATTTATTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTA
* ** *
649 AAAATTTATTGT
326 GAAATAAATT-C
* * * *
661 GGCAAAAAATGGAAAAAACGATATTAGAAGCATGGAAAACCCTAAAATATTTTTGGCATTGAATT
1 AGAAAAAAATGGAAAAAACGATATTAGAAGCGTGAAAAACCCTAAAATATTTTTGGCATTGAATT
* * *
726 ATATGATTTTTCTGAGTATTGTGGC--AAAATTGGGAGAAATATTTTCGGGTCAGTTTTCTGCAA
66 ATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGGAAATCTTTTCGGGTCAGTTTTTTGCAA
* *
789 AATTTTAGCCCAAATCGTGTACTAACCATCACGGTTTTTGGCTGAAAACGCGTTTCGGGGCCCTG
131 AATTTTAGCCGAAATCATGTACTAACCATCACGGTTTTTGGCTGAAAACGCGTTTCGGGGCCCTG
* * *
854 ACTCAGTTTTGCATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATACTCATCTAAGCAAATC
196 ACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTCGAAATATCTATATTCATCTAATCAAATC
* *
919 TCTCAGCCACATTGGATTTACAGATTTATTTTTACGAGCATCTGGATCTTGTTTCGATTTAATTA
261 TCTCAGCCACAATGGATTTACAGATTTATTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTA
** *
984 GAAATTTATTGT
326 GAAATAAATT-C
* * * *
996 GGCAAAAAATGGAAAAAACGATATTAGAAGCATGGAAAACCCTAAAATATTTTTGGCATTGAATT
1 AGAAAAAAATGGAAAAAACGATATTAGAAGCGTGAAAAACCCTAAAATATTTTTGGCATTGAATT
* * *
1061 ATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGAGAAATATTTTCGGGTCAGTTTTCTGCAA
66 ATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGGAAATCTTTTCGGGTCAGTTTTTTGCAA
* *
1126 AATTTTAGTCC-AAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGGGCCCT
131 AATTTTAG-CCGAAATCATGTACTAACCATCACGGTTTTTGGCTGAAAACGCGTTTCGGGGCCCT
* * * *
1190 GACTCAGTTTTGCATGATTTTTGGCAG-AAGACTCCTCGAAATGTATGTATTCATCTAACCAAAT
195 GACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTCGAAATATCTATATTCATCTAATCAAAT
* * *
1254 CTCTCAGCCACACTGGATTTACAGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATC
260 CTCTCAGCCACAATGGATTTACAGATTTATTTTTACGAGCATCTGAATCTTGTTTCGATTTAATT
1319 AGAAATAAATTC
325 AGAAATAAATTC
** * *
1331 AGAAAAAAATGGAAAAAACGATATTAGAAGCGTGAAAAACATTAAAATTTTTTTGGCGTTGAATT
1 AGAAAAAAATGGAAAAAACGATATTAGAAGCGTGAAAAACCCTAAAATATTTTTGGCATTGAATT
* ** *
1396 ATATGATTTTACTGAGTATTGTGGCAAAACTTTGGGGAAAATCTTTTCGGGTCAGTTTTTTGCAA
66 ATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGGAAATCTTTTCGGGTCAGTTTTTTGCAA
* * *
1461 AATTTTAGCCGAAAGCGTGTACTAACCATCACGGTTTTT-GCTGAAAACGCGTTTCGAGGCCCTG
131 AATTTTAGCCGAAATCATGTACTAACCATCACGGTTTTTGGCTGAAAACGCGTTTCGGGGCCCTG
* * * ** * * * *
1525 ACTCAGTGTTGCATGATTTTTGGTAAAAAGACTCCTAAAAATAACTGTACTCATCTAAGCAAATC
196 ACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTCGAAATATCTATATTCATCTAATCAAATC
* * * * *
1590 TCTCAGCCACATTGGATTTACAGATTTGTTTTTACAACCATCTGGATCTTGTTTCGATTTAATTA
261 TCTCAGCCACAATGGATTTACAGATTTATTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTA
1655 GAAATAAATTC
326 GAAATAAATTC
** * ** *
1666 AG-AAAAAATGG-AAAAACGATATTAGAAGCGTGAAAAACATTAAAATTTTTTTAACGTTGAATT
1 AGAAAAAAATGGAAAAAACGATATTAGAAGCGTGAAAAACCCTAAAATATTTTTGGCATTGAATT
* * * * * * * *
1729 ATATGATTTTACTGAGTATTATGGCACAAAATTGGGGAAAAACTTTTCGGTTCGGTTTTTTTTCA
66 ATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGGAAATCTTTTCGGGTCAG-TTTTTTGCA
* * * *
1794 AAATTTTAGCTGAAATCATGTA-TTACCATCACGGTTTTTGGCTAAAAACGCGTTTCGGGGCTCT
130 AAATTTTAGCCGAAATCATGTACTAACCATCACGGTTTTTGGCTGAAAACGCGTTTCGGGGCCCT
* * *
1858 GGCTCAGTTTTGCATGATTTTTGGAAGAAAGACTCCTCGAAATATATATATTCATCTAATCAAAT
195 GACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTCGAAATATCTATATTCATCTAATCAAAT
* *
1923 CT-T-AGTCACAATGGATTTA-AGGATTTATTTTTACCG-GTATCTGAATCTTGTTTCGATTTAA
260 CTCTCAGCCACAATGGATTTACA-GATTTATTTTTA-CGAGCATCTGAATCTTGTTTCGATTTAA
1984 TTAGAAATAAATTC
323 TTAGAAATAAATTC
** *
1998 AGAAAAAAATGG-AAAATTGATATTAGAAACGTGAAAAACCCTAAAATATTTTTGGCATTGAATT
1 AGAAAAAAATGGAAAAAACGATATTAGAAGCGTGAAAAACCCTAAAATATTTTTGGCATTGAATT
* * * *
2062 ATATTATTTTTCTGAGTATTATGGC-AAAAATTGGGGGAAATCGTTTCGGGTCAGCTTTTTGCAA
66 ATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGGAAATCTTTTCGGGTCAGTTTTTTGCAA
* * * *
2126 AATTTTAGCCGGAATTATGTACTAACAATCACGGTTTTTGGCTGAAAACGCATTTCGGGGCCCTG
131 AATTTTAGCCGAAATCATGTACTAACCATCACGGTTTTTGGCTGAAAACGCGTTTCGGGGCCCTG
* * * **
2191 ACTCAGTTTTGCATGATTTTTGGCAGAAAGTCTTCTCGAAATATCTATATTCATCTATTCTTATC
196 ACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTCGAAATATCTATATTCATCTAATCAAATC
* * * *
2256 TCTCAGCAAAAATGGATTTACGGATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTA
261 TCTCAGCCACAATGGATTTACAGATTTATTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTA
** *
2321 GAAATTTATTGT
326 GAAATAAATT-C
* * * * * *
2333 GGCAAAAAATGGAAAAAACGATATTAGAAGCATGGAAAATCCTAAAATATTTTTGGCCTTGAATT
1 AGAAAAAAATGGAAAAAACGATATTAGAAGCGTGAAAAACCCTAAAATATTTTTGGCATTGAATT
* * * *
2398 ATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGAGAACTATTTTCGGGTCAGTTTTCTGCAA
66 ATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGGAAATCTTTTCGGGTCAGTTTTTTGCAA
* * * * ** ***
2463 AATTTTAGCCCAAATCGTGTACTAACCATCCCGGTTTTTGGCTAAAAACGCAATTC-GGGTTTTG
131 AATTTTAGCCGAAATCATGTACTAACCATCACGGTTTTTGGCTGAAAACGCGTTTCGGGGCCCTG
* * * *
2527 GCTTAGTTTTGCATGATTTTTGGAAGAAAGACTCCTCGAAATATATATATTCATCTAATCAAATC
196 ACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTCGAAATATCTATATTCATCTAATCAAATC
* * ** *
2592 T-T-AGACACAATGGATTTA-AGGATTAATTTTTACCTGTATCTGAATCTTGTTTCGATTTAATT
261 TCTCAGCCACAATGGATTTACA-GATTTATTTTTACGAGCATCTGAATCTTGTTTCGATTTAATT
2654 AGAAATAAATTC
325 AGAAATAAATTC
* * * *
2666 AGAAAAAAATGG-AAAATCAATATTAGAAGAGTGAAAAACCCTAAATTATTTTTGGCATTGAATT
1 AGAAAAAAATGGAAAAAACGATATTAGAAGCGTGAAAAACCCTAAAATATTTTTGGCATTGAATT
* * * * *
2730 ATATTATTTTTCTGAGTATTATGGCAAAAAGTTGGGGGAAATCGTTTCGGGTCAGCTTTTTGCAT
66 ATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGGAAATCTTTTCGGGTCAGTTTTTTGCA-
* * *
2795 AAA-TTTAGCCGGAATCATGTACTAACAATCACGGTTTTTGGCTG-AAACGCATTTCGGGGCCCT
130 AAATTTTAGCCGAAATCATGTACTAACCATCACGGTTTTTGGCTGAAAACGCGTTTCGGGGCCCT
* * *
2858 GACTCAGTTTTGCATGATTTTTGGCAGAAAGTCTTCTCGAAATATCTATATTCATCTAATTAAAT
195 GACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTCGAAATATCTATATTCATCTAATCAAAT
* * *
2923 CTCTCGGCCACAATGGATTTACGGATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATT
260 CTCTCAGCCACAATGGATTTACAGATTTATTTTTACGAGCATCTGAATCTTGTTTCGATTTAATT
** *
2988 AGAAATTTATTGT
325 AGAAATAAATT-C
* * *
3001 GGCAAAAAAATGGAAAAAACGATATTAGAAGCATGGAAAACCCTAAAATATTTTTGGCATTGAAT
1 AG-AAAAAAATGGAAAAAACGATATTAGAAGCGTGAAAAACCCTAAAATATTTTTGGCATTGAAT
* *
3066 TATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGAGAAATATTTTCGGGTCAGTTTTTTGCA
65 TATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGGAAATCTTTTCGGGTCAGTTTTTTGCA
* *
3131 AAATTTTAGCCGAAATC--GT-GT----ATCACGGTTTTTGGCTGAAAAACGCGTTTCGGGTCCC
130 AAATTTTAGCCGAAATCATGTACTAACCATCACGGTTTTTGGCTG-AAAACGCGTTTCGGGGCCC
* *
3189 TGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTCGAAATATCTGTATTCATCTAACCAAA
194 TGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTCGAAATATCTATATTCATCTAATCAAA
* *
3254 TCTCTCAGCCACATTGGATTTACAGATTTGTTTTTAC-ATGCATCTGAATCTTGTTTCGATTTAA
259 TCTCTCAGCCACAATGGATTTACAGATTTATTTTTACGA-GCATCTGAATCTTGTTTCGATTTAA
3318 TTAGAAATAAATTC
323 TTAGAAATAAATTC
** * * *
3332 AG-AAAAAATGG-AAAAACGATATTAGAAGCGTGAAAAACATTAAATTTTTTTTGGCGTTGAATT
1 AGAAAAAAATGGAAAAAACGATATTAGAAGCGTGAAAAACCCTAAAATATTTTTGGCATTGAATT
* *
3395 ATATGATTTTACTGAGTATTGTGGCAAAAAATTGGGGAAAATCTTTTCGGGTCAGTTTTTTGCAA
66 ATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGGAAATCTTTTCGGGTCAGTTTTTTGCAA
*
3460 AATTTTAGCCGAAATCATTTACTAACCATCACGGTTTTTGGCTGAAAACGCGTTTCGGGGCCCTG
131 AATTTTAGCCGAAATCATGTACTAACCATCACGGTTTTTGGCTGAAAACGCGTTTCGGGGCCCTG
* *
3525 ACTCAGTTTTGCATGATTTTTGGCAGAAAG--TCCTTGAAATATCTATATTCATCTAACCAAATC
196 ACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTCGAAATATCTATATTCATCTAATCAAATC
* * *
3588 TCTCAGCCACATTGGATTTACAGATTTGTTTTTACGAGCATCTGGATCTTGTTTCGATTTAATTA
261 TCTCAGCCACAATGGATTTACAGATTTATTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTA
*
3653 CAAATAAATTC
326 GAAATAAATTC
*
3664 AGAAAAAAATGG-AAAAACGATATTAGAAGCGTGGAAAACCCTAAAATATTTTTGGCATTGAATT
1 AGAAAAAAATGGAAAAAACGATATTAGAAGCGTGAAAAACCCTAAAATATTTTTGGCATTGAATT
* *
3728 ATATGATTTTACTGAGTATTGTGGCAAAAAATTGGGGAAAATCTTTTCGGGTCAGTTTTTTGCAA
66 ATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGGAAATCTTTTCGGGTCAGTTTTTTGCAA
* * * * *
3793 AATTTTAGCCGAAATCATGTACT-----TCGCGGTTTTTGGCTGAAAAGGCGTTTCGAGGACTTG
131 AATTTTAGCCGAAATCATGTACTAACCATCACGGTTTTTGGCTGAAAACGCGTTTCGGGGCCCTG
* * * * * *
3853 ACTCAGTTTTGCATGATTTTTGGCAAAAACACTCCTAGAAATATCTGTACTCATCTAAGCAAATC
196 ACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTCGAAATATCTATATTCATCTAATCAAATC
* * * *
3918 TCTCAGCCACATTGGATTTACAGATTTGTTTGTACGAGCATCTGGATCTTGTTTCGATTTAATTA
261 TCTCAGCCACAATGGATTTACAGATTTATTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTA
*
3983 GAAATAAATTT
326 GAAATAAATTC
* * *
3994 AG-AAAAAATGGAAAAAACGATATTAGAAGCATGGAAAACCCTAAAATATTTCTGGCATTGAATT
1 AGAAAAAAATGGAAAAAACGATATTAGAAGCGTGAAAAACCCTAAAATATTTTTGGCATTGAATT
* * * *
4058 ATATGATTATTCTGAGTATTGTGGCAAAAAATCGCGAGAAATCTTTTCGGGTCAGTTTTTTGCAA
66 ATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGGAAATCTTTTCGGGTCAGTTTTTTGCAA
* * * * *
4123 AATTTTAGTCGAAATCGTGTACTAATCATCAAGGTTTTTGGTTGAAAACGCGTTT
131 AATTTTAGCCGAAATCATGTACTAACCATCACGGTTTTTGGCTGAAAACGCGTTT
4178 TTGGTTAAAA
Statistics
Matches: 3411, Mismatches: 363, Indels: 135
0.87 0.09 0.03
Matches are distributed among these distances:
320 28 0.01
321 65 0.02
322 1 0.00
323 64 0.02
324 43 0.01
325 11 0.00
326 71 0.02
327 1 0.00
328 183 0.05
329 18 0.01
330 254 0.07
331 58 0.02
332 655 0.19
333 383 0.11
334 430 0.13
335 577 0.17
336 246 0.07
337 321 0.09
338 2 0.00
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.35
Consensus pattern (336 bp):
AGAAAAAAATGGAAAAAACGATATTAGAAGCGTGAAAAACCCTAAAATATTTTTGGCATTGAATT
ATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGGGAAATCTTTTCGGGTCAGTTTTTTGCAA
AATTTTAGCCGAAATCATGTACTAACCATCACGGTTTTTGGCTGAAAACGCGTTTCGGGGCCCTG
ACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTCGAAATATCTATATTCATCTAATCAAATC
TCTCAGCCACAATGGATTTACAGATTTATTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTA
GAAATAAATTC
Found at i:2676 original size:668 final size:668
Alignment explanation
Indices: 1--4177 Score: 5554
Period size: 668 Copynumber: 6.3 Consensus size: 668
** * *
1 AGAAAAAAATGGAAAAAACGATATTAGAAGCGTGAAAAACATTAAAATTTTTTTTGGCGTTGAAT
1 AGAAAAAAATGGAAAAAACGATATTAGAAGCGTGAAAAACCCTAAAA-TATTTTTGGCATTGAAT
* * * *
66 TATATGATTTTTAATGAGTATTGTGGCAAAAAATT-GGGGAAAT-TTTTAAAGGATCGGTTTTTT
65 TATATGATTTTT-CTGAGTATTGTGGC-AAAAATTGGGGGAAATCTTTT--CGGGTCAG-TTTTT
* *
129 TGCAAAATTTTAGCTGAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTTTC-GGG
125 TGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTGAAAACGCGTTTCGGGG
** * * * *
193 TTCTGGCTCAGTTTTGCATGATTTTTGGAAGAAAGACTCCTCGAAATATATATATTCATCTAATC
190 CCCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAATC
* ** ** *
258 AAATCT-T-AGACACAATGGATTTATGGATTTATTTTTACCTGTATCTGAATCTTGTTTCGATTT
255 AAATCTCTCAGCCACAATGGATTTACAGATTTATTTTTACGAGCATCTGAATCTTGTTTCGATTT
* * * *
321 AATTAGAAATAAATTCAG-AAAAAATGGAAAATCGATATTAGAAGCGTGAAAAACCCCAAAATAT
320 AATTAGAAATAAATTCAGCAAAAAATGGAAAAACGATATTAGAAGCATGGAAAACCCTAAAATAT
* *
385 TTTTGGCATTTAATTATATGATTTTACTGAGTATTGTGGCAAAAAATTGGGGAAAATCTTTTCGG
385 TTTTGGCATTGAATTATATGATTTTACTGAGTATTGTGGCAAAAAATTGGGG-AAATATTTTCGG
* * * *
450 GTCAGTTTTTTGTAATATTTTAG--C----C--G-A-AAGCATCACGGTTTTTGGCTGAAAACGC
449 GTCAGTTTTTTGCAAAATTTTAGCCCAAATCGTGTATAACCATCACGGTTTTTGGCTAAAAACGC
* * * ** * *
505 ATTTCGGGGCCCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGTCTTTTCGAAATATCTATTTT
514 GTTTCGGGGCCCTGACTCAGTTTTGCATGATTTTTGGAAGAAAGACTCCTCGAAATATATATATT
* *
570 CATCTAATCAAATCTCTCAGCCACAATGGATTTACGGATTTATTTTTACGAGTATCTGAATCTTG
579 CATCTAATCAAATCTCTCAGCCACAATGGATTTACAGATTTATTTTTACGAGCATCTGAATCTTG
* ** *
635 TTTCGATTTAATTAAAAATTTATTGT
644 TTTCGATTTAATTAGAAATAAATT-C
* * * *
661 GGCAAAAAATGGAAAAAACGATATTAGAAGCATGGAAAACCCTAAAATATTTTTGGCATTGAATT
1 AGAAAAAAATGGAAAAAACGATATTAGAAGCGTGAAAAACCCTAAAATATTTTTGGCATTGAATT
* * *
726 ATATGATTTTTCTGAGTATTGTGGC-AAAATTGGGAGAAATATTTTCGGGTCAGTTTTCTGCAAA
66 ATATGATTTTTCTGAGTATTGTGGCAAAAATTGGGGGAAATCTTTTCGGGTCAGTTTTTTGCAAA
*
790 ATTTTAGCCCAAATCGTGTACTAACCATCACGGTTTTTGGCTGAAAACGCGTTTCGGGGCCCTGA
131 ATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTGAAAACGCGTTTCGGGGCCCTGA
* *
855 CTCAGTTTTGCATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATACTCATCTAAGCAAATCT
196 CTCAGTTTTGCATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAATCAAATCT
* *
920 CTCAGCCACATTGGATTTACAGATTTATTTTTACGAGCATCTGGATCTTGTTTCGATTTAATTAG
261 CTCAGCCACAATGGATTTACAGATTTATTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAG
** **
985 AAATTTATTGTGGCAAAAAATGGAAAAAACGATATTAGAAGCATGGAAAACCCTAAAATATTTTT
326 AAATAAATT-CAGCAAAAAATGG-AAAAACGATATTAGAAGCATGGAAAACCCTAAAATATTTTT
*
1050 GGCATTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGAGAAATATTTTCGGGTCA
389 GGCATTGAATTATATGATTTTACTGAGTATTGTGGCAAAAAATTGGG-GAAATATTTTCGGGTCA
* *
1115 GTTTTCTGCAAAATTTTAGTCCAAATCGTGTACTAACCATCACGGTTTTTGGCTAAAAACGCGTT
453 GTTTTTTGCAAAATTTTAGCCCAAATCGTGTA-TAACCATCACGGTTTTTGGCTAAAAACGCGTT
* * *
1180 TCGGGGCCCTGACTCAGTTTTGCATGATTTTTGGCAG-AAGACTCCTCGAAATGTATGTATTCAT
517 TCGGGGCCCTGACTCAGTTTTGCATGATTTTTGGAAGAAAGACTCCTCGAAATATATATATTCAT
* * *
1244 CTAACCAAATCTCTCAGCCACACTGGATTTACAGATTTGTTTTTACGAGCATCTGAATCTTGTTT
582 CTAATCAAATCTCTCAGCCACAATGGATTTACAGATTTATTTTTACGAGCATCTGAATCTTGTTT
*
1309 CGATTTAATCAGAAATAAATTC
647 CGATTTAATTAGAAATAAATTC
** * *
1331 AGAAAAAAATGGAAAAAACGATATTAGAAGCGTGAAAAACATTAAAATTTTTTTGGCGTTGAATT
1 AGAAAAAAATGGAAAAAACGATATTAGAAGCGTGAAAAACCCTAAAATATTTTTGGCATTGAATT
* * *
1396 ATATGATTTTACTGAGTATTGTGGCAAAACTTTGGGGAAAATCTTTTCGGGTCAGTTTTTTGCAA
66 ATATGATTTTTCTGAGTATTGTGGCAAAA-ATTGGGGGAAATCTTTTCGGGTCAGTTTTTTGCAA
* *
1461 AATTTTAGCCGAAAGCGTGTACTAACCATCACGGTTTTT-GCTGAAAACGCGTTTCGAGGCCCTG
130 AATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTGAAAACGCGTTTCGGGGCCCTG
* * * * ** * * * *
1525 ACTCAGTGTTGCATGATTTTTGGTAAAAAGACTCCTAAAAATAACTGTACTCATCTAAGCAAATC
195 ACTCAGTTTTGCATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAATCAAATC
* * * * *
1590 TCTCAGCCACATTGGATTTACAGATTTGTTTTTACAACCATCTGGATCTTGTTTCGATTTAATTA
260 TCTCAGCCACAATGGATTTACAGATTTATTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTA
* * ** * *
1655 GAAATAAATTCAG-AAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACATTAAAATTTTTTTA
325 GAAATAAATTCAGCAAAAAATGGAAAAACGATATTAGAAGCATGGAAAACCCTAAAATATTTTTG
* * * * * * *
1719 ACGTTGAATTATATGATTTTACTGAGTATTATGGCACAAAATTGGGGAAAAACTTTTCGGTTCGG
390 GCATTGAATTATATGATTTTACTGAGTATTGTGGCAAAAAATTGGGGAAATA-TTTTCGGGTCAG
* ** * *
1784 TTTTTTTTCAAAATTTTAGCTGAAATCATGTATTACCATCACGGTTTTTGGCTAAAAACGCGTTT
454 -TTTTTTGCAAAATTTTAGCCCAAATCGTGTATAACCATCACGGTTTTTGGCTAAAAACGCGTTT
* *
1849 CGGGGCTCTGGCTCAGTTTTGCATGATTTTTGGAAGAAAGACTCCTCGAAATATATATATTCATC
518 CGGGGCCCTGACTCAGTTTTGCATGATTTTTGGAAGAAAGACTCCTCGAAATATATATATTCATC
* *
1914 TAATCAAATCT-T-AGTCACAATGGATTTA-AGGATTTATTTTTACCG-GTATCTGAATCTTGTT
583 TAATCAAATCTCTCAGCCACAATGGATTTACA-GATTTATTTTTA-CGAGCATCTGAATCTTGTT
1975 TCGATTTAATTAGAAATAAATTC
646 TCGATTTAATTAGAAATAAATTC
** *
1998 AGAAAAAAATGG-AAAATTGATATTAGAAACGTGAAAAACCCTAAAATATTTTTGGCATTGAATT
1 AGAAAAAAATGGAAAAAACGATATTAGAAGCGTGAAAAACCCTAAAATATTTTTGGCATTGAATT
* * * *
2062 ATATTATTTTTCTGAGTATTATGGCAAAAATTGGGGGAAATCGTTTCGGGTCAGCTTTTTGCAAA
66 ATATGATTTTTCTGAGTATTGTGGCAAAAATTGGGGGAAATCTTTTCGGGTCAGTTTTTTGCAAA
* ** * *
2127 ATTTTAGCCGGAATTATGTACTAACAATCACGGTTTTTGGCTGAAAACGCATTTCGGGGCCCTGA
131 ATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTGAAAACGCGTTTCGGGGCCCTGA
* * **
2192 CTCAGTTTTGCATGATTTTTGGCAGAAAGTCTTCTCGAAATATCTATATTCATCTATTCTTATCT
196 CTCAGTTTTGCATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAATCAAATCT
* * * *
2257 CTCAGCAAAAATGGATTTACGGATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAG
261 CTCAGCCACAATGGATTTACAGATTTATTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAG
** ** *
2322 AAATTTATTGTGGCAAAAAATGGAAAAAACGATATTAGAAGCATGGAAAATCCTAAAATATTTTT
326 AAATAAATT-CAGCAAAAAATGG-AAAAACGATATTAGAAGCATGGAAAACCCTAAAATATTTTT
* * *
2387 GGCCTTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGAGAACTATTTTCGGGTCA
389 GGCATTGAATTATATGATTTTACTGAGTATTGTGGCAAAAAATTGGG-GAAATATTTTCGGGTCA
* * **
2452 GTTTTCTGCAAAATTTTAGCCCAAATCGTGTACTAACCATCCCGGTTTTTGGCTAAAAACGCAAT
453 GTTTTTTGCAAAATTTTAGCCCAAATCGTGTA-TAACCATCACGGTTTTTGGCTAAAAACGCGTT
*** * *
2517 TC-GGGTTTTGGCTTAGTTTTGCATGATTTTTGGAAGAAAGACTCCTCGAAATATATATATTCAT
517 TCGGGGCCCTGACTCAGTTTTGCATGATTTTTGGAAGAAAGACTCCTCGAAATATATATATTCAT
* * ** *
2581 CTAATCAAATCT-T-AGACACAATGGATTTA-AGGATTAATTTTTACCTGTATCTGAATCTTGTT
582 CTAATCAAATCTCTCAGCCACAATGGATTTACA-GATTTATTTTTACGAGCATCTGAATCTTGTT
2643 TCGATTTAATTAGAAATAAATTC
646 TCGATTTAATTAGAAATAAATTC
* * * *
2666 AGAAAAAAATGG-AAAATCAATATTAGAAGAGTGAAAAACCCTAAATTATTTTTGGCATTGAATT
1 AGAAAAAAATGGAAAAAACGATATTAGAAGCGTGAAAAACCCTAAAATATTTTTGGCATTGAATT
* * * *
2730 ATATTATTTTTCTGAGTATTATGGCAAAAAGTTGGGGGAAATCGTTTCGGGTCAGCTTTTTGCAT
66 ATATGATTTTTCTGAGTATTGTGGCAAAAA-TTGGGGGAAATCTTTTCGGGTCAGTTTTTTGCA-
* * * *
2795 AAA-TTTAGCCGGAATCATGTACTAACAATCACGGTTTTTGGCTG-AAACGCATTTCGGGGCCCT
129 AAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTGAAAACGCGTTTCGGGGCCCT
* *
2858 GACTCAGTTTTGCATGATTTTTGGCAGAAAGTCTTCTCGAAATATCTATATTCATCTAATTAAAT
194 GACTCAGTTTTGCATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAATCAAAT
* * *
2923 CTCTCGGCCACAATGGATTTACGGATTTATTTTTACGAGTATCTGAATCTTGTTTCGATTTAATT
259 CTCTCAGCCACAATGGATTTACAGATTTATTTTTACGAGCATCTGAATCTTGTTTCGATTTAATT
** **
2988 AGAAATTTATTGTGGCAAAAAAATGGAAAAAACGATATTAGAAGCATGGAAAACCCTAAAATATT
324 AGAAATAAATT-CAGC-AAAAAATGG-AAAAACGATATTAGAAGCATGGAAAACCCTAAAATATT
*
3053 TTTGGCATTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGAGAAATATTTTCGGG
386 TTTGGCATTGAATTATATGATTTTACTGAGTATTGTGGCAAAAAATTGGG-GAAATATTTTCGGG
*
3118 TCAGTTTTTTGCAAAATTTTAGCCGAAATCGTG--T----ATCACGGTTTTTGGCTGAAAAACGC
450 TCAGTTTTTTGCAAAATTTTAGCCCAAATCGTGTATAACCATCACGGTTTTTGGCT-AAAAACGC
* * * *
3177 GTTTCGGGTCCCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTCGAAATATCTGTATT
514 GTTTCGGGGCCCTGACTCAGTTTTGCATGATTTTTGGAAGAAAGACTCCTCGAAATATATATATT
* * *
3242 CATCTAACCAAATCTCTCAGCCACATTGGATTTACAGATTTGTTTTTAC-ATGCATCTGAATCTT
579 CATCTAATCAAATCTCTCAGCCACAATGGATTTACAGATTTATTTTTACGA-GCATCTGAATCTT
3306 GTTTCGATTTAATTAGAAATAAATTC
643 GTTTCGATTTAATTAGAAATAAATTC
** * * *
3332 AG-AAAAAATGG-AAAAACGATATTAGAAGCGTGAAAAACATTAAATTTTTTTTGGCGTTGAATT
1 AGAAAAAAATGGAAAAAACGATATTAGAAGCGTGAAAAACCCTAAAATATTTTTGGCATTGAATT
* *
3395 ATATGATTTTACTGAGTATTGTGGCAAAAAATTGGGGAAAATCTTTTCGGGTCAGTTTTTTGCAA
66 ATATGATTTTTCTGAGTATTGTGGC-AAAAATTGGGGGAAATCTTTTCGGGTCAGTTTTTTGCAA
* *
3460 AATTTTAGCCGAAATCATTTACTAACCATCACGGTTTTTGGCTGAAAACGCGTTTCGGGGCCCTG
130 AATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTGAAAACGCGTTTCGGGGCCCTG
* * *
3525 ACTCAGTTTTGCATGATTTTTGGCAGAAAG--TCCTTGAAATATCTATATTCATCTAACCAAATC
195 ACTCAGTTTTGCATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAATCAAATC
* * *
3588 TCTCAGCCACATTGGATTTACAGATTTGTTTTTACGAGCATCTGGATCTTGTTTCGATTTAATTA
260 TCTCAGCCACAATGGATTTACAGATTTATTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTA
* * *
3653 CAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGGAAAACCCTAAAATATTTTTG
325 GAAATAAATTCAGCAAAAAATGGAAAAACGATATTAGAAGCATGGAAAACCCTAAAATATTTTTG
*
3718 GCATTGAATTATATGATTTTACTGAGTATTGTGGCAAAAAATTGGGGAAAATCTTTTCGGGTCAG
390 GCATTGAATTATATGATTTTACTGAGTATTGTGGCAAAAAATTGGGG-AAATATTTTCGGGTCAG
* * * * * *
3783 TTTTTTGCAAAATTTTAGCCGAAATCATG--T-A-CTTCGCGGTTTTTGGCTGAAAAGGCGTTTC
454 TTTTTTGCAAAATTTTAGCCCAAATCGTGTATAACCATCACGGTTTTTGGCTAAAAACGCGTTTC
* * * * * * * *
3844 GAGGACTTGACTCAGTTTTGCATGATTTTTGGCAA-AAACACTCCTAGAAATATCTGTACTCATC
519 GGGGCCCTGACTCAGTTTTGCATGATTTTTGG-AAGAAAGACTCCTCGAAATATATATATTCATC
* * * * *
3908 TAAGCAAATCTCTCAGCCACATTGGATTTACAGATTTGTTTGTACGAGCATCTGGATCTTGTTTC
583 TAATCAAATCTCTCAGCCACAATGGATTTACAGATTTATTTTTACGAGCATCTGAATCTTGTTTC
*
3973 GATTTAATTAGAAATAAATTT
648 GATTTAATTAGAAATAAATTC
* * *
3994 AG-AAAAAATGGAAAAAACGATATTAGAAGCATGGAAAACCCTAAAATATTTCTGGCATTGAATT
1 AGAAAAAAATGGAAAAAACGATATTAGAAGCGTGAAAAACCCTAAAATATTTTTGGCATTGAATT
* * * *
4058 ATATGATTATTCTGAGTATTGTGGCAAAAAATCGCGAGAAATCTTTTCGGGTCAGTTTTTTGCAA
66 ATATGATTTTTCTGAGTATTGTGGC-AAAAATTGGGGGAAATCTTTTCGGGTCAGTTTTTTGCAA
* * * *
4123 AATTTTAGTCGAAATCGTGTACTAATCATCAAGGTTTTTGGTTGAAAACGCGTTT
130 AATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTGAAAACGCGTTT
4178 TTGGTTAAAA
Statistics
Matches: 3145, Mismatches: 320, Indels: 101
0.88 0.09 0.03
Matches are distributed among these distances:
655 62 0.02
656 77 0.02
657 8 0.00
658 78 0.02
659 28 0.01
660 51 0.02
661 244 0.08
662 181 0.06
663 181 0.06
664 162 0.05
665 210 0.07
666 330 0.10
667 83 0.03
668 576 0.18
669 401 0.13
670 90 0.03
671 251 0.08
672 132 0.04
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.35
Consensus pattern (668 bp):
AGAAAAAAATGGAAAAAACGATATTAGAAGCGTGAAAAACCCTAAAATATTTTTGGCATTGAATT
ATATGATTTTTCTGAGTATTGTGGCAAAAATTGGGGGAAATCTTTTCGGGTCAGTTTTTTGCAAA
ATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGCTGAAAACGCGTTTCGGGGCCCTGA
CTCAGTTTTGCATGATTTTTGGCAGAAAGACTTCTCGAAATATCTATATTCATCTAATCAAATCT
CTCAGCCACAATGGATTTACAGATTTATTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAG
AAATAAATTCAGCAAAAAATGGAAAAACGATATTAGAAGCATGGAAAACCCTAAAATATTTTTGG
CATTGAATTATATGATTTTACTGAGTATTGTGGCAAAAAATTGGGGAAATATTTTCGGGTCAGTT
TTTTGCAAAATTTTAGCCCAAATCGTGTATAACCATCACGGTTTTTGGCTAAAAACGCGTTTCGG
GGCCCTGACTCAGTTTTGCATGATTTTTGGAAGAAAGACTCCTCGAAATATATATATTCATCTAA
TCAAATCTCTCAGCCACAATGGATTTACAGATTTATTTTTACGAGCATCTGAATCTTGTTTCGAT
TTAATTAGAAATAAATTC
Found at i:4307 original size:148 final size:148
Alignment explanation
Indices: 4035--4325 Score: 442
Period size: 148 Copynumber: 2.0 Consensus size: 148
4025 TGGAAAACCC
4035 TAAAATATTTCTGGCATTGAATTATATGATTATTCTGAGTATTGTGGCAAAAAATCGCGAGAAAT
1 TAAAATATTTCTGGCATTGAATTATATGATTATTCTGAGTATTGTGGCAAAAAATCGCGAGAAAT
* * * * *
4100 CTTTTCGGGTCAGTTTTTTGCAAAATTTTAGTCGAAATCGTGTACTAATCATCAAGGTTTTTGGT
66 CTTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCGAAATCATGTACTAACCATCAAGGTTTCTGGC
4165 TGAAAACGCGTTTTTGGT
131 TGAAAACGCGTTTTTGGT
* * * * *
4183 TAAAATTTTTTTGGCGTTGAATTATATGATT-TTACTGAGTATTGTGGCAAAAAATTG-GGGAAA
1 TAAAATATTTCTGGCATTGAATTATATGATTATT-CTGAGTATTGTGGCAAAAAATCGCGAG-AA
*
4246 ATCTTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCGAAATCATGTACTAACCATCACGGTTTCTG
64 ATCTTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCGAAATCATGTACTAACCATCAAGGTTTCTG
*
4311 GCTGAAAACGTGTTT
129 GCTGAAAACGCGTTT
4326 CGGGGCCCTG
Statistics
Matches: 129, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
147 4 0.03
148 125 0.97
ACGTcount: A:0.29, C:0.12, G:0.20, T:0.39
Consensus pattern (148 bp):
TAAAATATTTCTGGCATTGAATTATATGATTATTCTGAGTATTGTGGCAAAAAATCGCGAGAAAT
CTTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCGAAATCATGTACTAACCATCAAGGTTTCTGGC
TGAAAACGCGTTTTTGGT
Found at i:4613 original size:483 final size:478
Alignment explanation
Indices: 3705--4660 Score: 1441
Period size: 483 Copynumber: 2.0 Consensus size: 478
3695 TGGAAAACCC
3705 TAAAATATTTTTGGCATTGAATTATATGATTTTACTGAGTATTGTGGCAAAAAATTGGGGAAAAT
1 TAAAATATTTTTGGCATTGAATTATATGATTTTACTGAGTATTGTGGCAAAAAATTGGGGAAAAT
* *
3770 CTTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCGAAATCATGTACTTCGCGGTTTTTGGCTGAAA
66 CTTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCGAAATCATGTACTTCACGGTTTCTGGCTGAAA
* * * * *
3835 AGGCGTTTCGAGGACTTGACTCAGTTTTGCATGATTTTTGGCAAAAACACTCCTAGAAATATCTG
131 ACGCGTTTCGAGGACCTGACTCAGTTTTGCATAATTTTTGACAAAAACACTCCTAGAAATATCTA
* *
3900 TACTCATCTAAGCAAATCTCTCAGCCACATTGGATTTACAGATTTGTTTGTACGAGCATCTGGAT
196 TACTCATCTAAGCAAATCTCTCAGCCACACTGGATTTACAGATTTGTTTGTACGAGCATCTGAAT
* *
3965 CTTGTTTCGATTTAATTAGAAATAAATTTAGAAAAAATGGAAAAAACGATATTAGAAGCATGGAA
261 CTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAATGGAAAAAACGATATTAGAAGCATGAAA
*
4030 AACCCTAAAATATTTCTGGCATTGAATTATATGATTATTCTGAGTATTGTGGCAAAAAATCGCGA
326 AACACTAAAATATTTCTGGCATTGAATTATATGATTATTCTGAGTATTGTGGCAAAAAATCGCGA
* * * *
4095 GAAATCTTTTCGGGTCAGTTTTTTGCAAAATTTTAGTCGAAATCGTGTACTAATCATCAAGGTTT
391 GAAATCTTTTCGGGTCAGTTCTTTGCAAAATTTTAGCCGAAAGCGTGTACTAACCATCAAGGTTT
* *
4160 TTGGTTGAAAACGCGTTTTTGGT
456 TTAGCTGAAAACGCGTTTTTGGT
* *
4183 TAAAATTTTTTTGGCGTTGAATTATATGATTTTACTGAGTATTGTGGCAAAAAATTGGGGAAAAT
1 TAAAATATTTTTGGCATTGAATTATATGATTTTACTGAGTATTGTGGCAAAAAATTGGGGAAAAT
4248 CTTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCGAAATCATGTACTAACCATCACGGTTTCTGGC
66 CTTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCGAAATCATGTACT-----TCACGGTTTCTGGC
* * * * ** * *
4313 TGAAAACGTGTTTCGGGGCCCTGACTCAGTTTTGCATAATTTTTGACAGAAAGTCTTCTCGAAAT
126 TGAAAACGCGTTTCGAGGACCTGACTCAGTTTTGCATAATTTTTGACAAAAACACTCCTAGAAAT
* * *
4378 ATCTATATTCATCTAATCAAATCTCTCAGCCACACTGGATTTACAGATTTGTTTTTACGAGCATC
191 ATCTATACTCATCTAAGCAAATCTCTCAGCCACACTGGATTTACAGATTTGTTTGTACGAGCATC
*
4443 TGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAATTGG-AAAAACGATATTCGAAGC
256 TGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAA-TGGAAAAAACGATATTAGAAGC
* * * * *
4507 GTGAAAAACATTAAAATTTTTTTGGCGTTGAATTATATGATT-TTACTGAGTATTGTGGCAAAAA
320 ATGAAAAACACTAAAATATTTCTGGCATTGAATTATATGATTATT-CTGAGTATTGTGGCAAAAA
* * *
4571 ATTG-GGGAAAATCTTTTCGGGTTAGTTCTTTGCAAAATTTTAGCCGAAAGCGTGTACTAACCAT
384 ATCGCGAG-AAATCTTTTCGGGTCAGTTCTTTGCAAAATTTTAGCCGAAAGCGTGTACTAACCAT
* *
4635 CACGGTTTTTAGCTGAAAAGGCGTTT
448 CAAGGTTTTTAGCTGAAAACGCGTTT
4661 CGAGGCCCTG
Statistics
Matches: 428, Mismatches: 42, Indels: 11
0.89 0.09 0.02
Matches are distributed among these distances:
478 109 0.25
482 4 0.01
483 312 0.73
484 3 0.01
ACGTcount: A:0.31, C:0.14, G:0.19, T:0.36
Consensus pattern (478 bp):
TAAAATATTTTTGGCATTGAATTATATGATTTTACTGAGTATTGTGGCAAAAAATTGGGGAAAAT
CTTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCGAAATCATGTACTTCACGGTTTCTGGCTGAAA
ACGCGTTTCGAGGACCTGACTCAGTTTTGCATAATTTTTGACAAAAACACTCCTAGAAATATCTA
TACTCATCTAAGCAAATCTCTCAGCCACACTGGATTTACAGATTTGTTTGTACGAGCATCTGAAT
CTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAATGGAAAAAACGATATTAGAAGCATGAAA
AACACTAAAATATTTCTGGCATTGAATTATATGATTATTCTGAGTATTGTGGCAAAAAATCGCGA
GAAATCTTTTCGGGTCAGTTCTTTGCAAAATTTTAGCCGAAAGCGTGTACTAACCATCAAGGTTT
TTAGCTGAAAACGCGTTTTTGGT
Found at i:4792 original size:335 final size:336
Alignment explanation
Indices: 4182--6178 Score: 2754
Period size: 335 Copynumber: 6.0 Consensus size: 336
4172 GCGTTTTTGG
4182 TTAAAATTTTTTTGGCGTTGAATTATATGATTTTACTGAGTATTGTGGCAAAAAATTGGGGAAAA
1 TTAAAATTTTTTTGGCGTTGAATTATATGATTTTACTGAGTATTGTGGCAAAAAATTGGGGAAAA
* *
4247 TCTTTTCGGGTCAG-TTTTTTGCAAAATTTTAGCCGAAATCATGTACTAACCATCACGGTTTCTG
66 TCTTTTCGGGTCAGTTTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTG
* * * * * *
4311 GCTGAAAACGTGTTTCGGGGCCCTGACTCAGTTTTGCATAATTTTTGACAGAAAGTCTTCTCGAA
131 GCTGAAAACGCGTTTCGAGGCCCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTCGAA
* * *
4376 ATATCTATATTCATCTAATCAAATCTCTCAGCCACACTGGATTTACAGATTTGTTTTTACGAGCA
196 ATATCTATATTCATCTAATCAAATCTTTCAGCCACAATGGATTTACAGATTTATTTTTACGAGCA
* *
4441 TCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAATTGGAAAAACGATATTCGAAG
261 TCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAG
4506 CGTGAAAAACA
326 CGTGAAAAACA
4517 TTAAAATTTTTTTGGCGTTGAATTATATGATTTTACTGAGTATTGTGGCAAAAAATTGGGGAAAA
1 TTAAAATTTTTTTGGCGTTGAATTATATGATTTTACTGAGTATTGTGGCAAAAAATTGGGGAAAA
* * * *
4582 TCTTTTCGGGTTAG-TTCTTTGCAAAATTTTAGCCGAAAGCGTGTACTAACCATCACGGTTTTTA
66 TCTTTTCGGGTCAGTTTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTG
* *
4646 GCTGAAAAGGCGTTTCGAGGCCCTGACTCAGTTTTGCATGATTTTTGGC-GAAAAGACTCCTAGA
131 GCTGAAAACGCGTTTCGAGGCCCTGACTCAGTTTTGCATGATTTTTGGCAG-AAAGACTCCTCGA
** * ** * * * *
4710 AATATCGGTACTCATCTAAGAAAATCTTTCAGCCATATTGGATTTACATATTTGTTTTTACGAGC
195 AATATCTATATTCATCTAATCAAATCTTTCAGCCACAATGGATTTACAGATTTATTTTTACGAGC
* * * *
4775 ATCTGGATCTTGTTTCGATTTAATTAGAAAGAAATTTAGAAAAAAATGGAAAAGCGATATTAGAA
260 ATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAA
*
4840 GTGTGAAAAACA
325 GCGTGAAAAACA
** *
4852 TTAAAATTTTTTTAAACGTTGAATTATATGATTTTACTGAGTATTTTGGCAAAAAAATT-GGGAA
1 TTAAAATTTTTTT-GGCGTTGAATTATATGATTTTACTGAGTATTGTGGC-AAAAAATTGGGGAA
* * ** *
4916 AAACTTTTCGGGTCAGTTTTTTTTTCAAAATTTTAGATGAAATCGTGTATTAACCATCACGGTTT
64 AATCTTTTCGGGTCAG-TTTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTT
* * * *
4981 TTGGATAAAAACGCGTTTCGAGGCTCTGACTCAGTTTTGCATGA-TTTTGGAAGAAAGACTCCTC
128 TTGGCTGAAAACGCGTTTCGAGGCCCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTC
** * *
5045 GAGGTATATATATTCATCTAATCAAATC-TT-AGCCACAATGGATTTA-AGGATTTATTTTTACC
193 GAAATATCTATATTCATCTAATCAAATCTTTCAGCCACAATGGATTTACA-GATTTATTTTTACG
* * *
5107 AGTATCTGAATCTTGTTTCGATTTAATTAGAAATAATTTCAGAAAAAAATGGAAAATCGATATTA
257 AGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTA
*
5172 GAAGCGTGAAAAAACC
322 GAAGCGTG-AAAAACA
* * * * * * *
5188 CT--AATTTTTTTGGCATTGAATTATATTATTTTTCTGAGTATTATGGCAAAAGATTGGGGGAAA
1 TTAAAATTTTTTTGGCGTTGAATTATATGATTTTACTGAGTATTGTGGCAAAAAATTGGGGAAAA
*
5251 TCTTTTCGGGTCAG-CTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTG
66 TCTTTTCGGGTCAGTTTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTG
*
5315 GCTGAAAACGCGTTTCGAGGCCCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTTCTCGAA
131 GCTGAAAACGCGTTTCGAGGCCCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTCGAA
* *
5380 ATATCTATATTCATCTAATCAAATCTTTCAGCCACAATGGATTTACAAATTTATTTTTACGAGTA
196 ATATCTATATTCATCTAATCAAATCTTTCAGCCACAATGGATTTACAGATTTATTTTTACGAGCA
* ** ** *
5445 TCCGAATCTTGTTTCGATTTAATTAGAAATGTATTGTGGCAAAAAATGGAAAAACGATATTAGAA
261 TCTGAATCTTGTTTCGATTTAATTAGAAATAAATT-CAGAAAAAAATGGAAAAACGATATTAGAA
* *
5510 GCATGAAAAACC
325 GCGTGAAAAACA
* * * * *
5522 CTAAAATATTCTTGGCATTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATT-GGGAGAA
1 TTAAAATTTTTTTGGCGTTGAATTATATGATTTTACTGAGTATTGTGGCAAAAAATTGGGGA-AA
* * * *
5586 ATCTTTACGGGTCAG-TTTTTTACAAAATTTTAGCCAAAATCGTGTACTAACCATCAAGGTTTTT
65 ATCTTTTCGGGTCAGTTTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTT
* * *
5650 GGCTGAAAACGCGTTCCGGGGCCCTGACTCAGTTTTGCATGATTTTTGGCAGACAGACTCCTCGA
130 GGCTGAAAACGCGTTTCGAGGCCCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTCGA
* * * *
5715 AATATCTATATTCATCTAACCAAATCTCTCAGCCACATTGGATTTACAGATTTGTTTTTACGAGC
195 AATATCTATATTCATCTAATCAAATCTTTCAGCCACAATGGATTTACAGATTTATTTTTACGAGC
*
5780 ATCTGAATCTTGTTTCGATTTAATCAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAA
260 ATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAA
5845 GCGTGAAAAACA
325 GCGTGAAAAACA
* * * *
5857 TTAAAATTTTTTTGGCGTTGACTTATATGATTTTACTTAGTATTATGGCACAAAATTGGGGAAAA
1 TTAAAATTTTTTTGGCGTTGAATTATATGATTTTACTGAGTATTGTGGCAAAAAATTGGGGAAAA
* * * * * * *
5922 ACTTTTCGGTTCGGTTTTTTTTCAAAATTTTAGCTGAAATCATGTA-TTACCATCACGGTTTTTG
66 TCTTTTCGGGTCAGTTTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTG
* * * * *
5986 GCTAAAAACGCGTTTCGGGGCTCTGGCTCAGTTTTGCATGATTTTTGGAAGAAAGACTCCTCGAA
131 GCTGAAAACGCGTTTCGAGGCCCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTCGAA
* *
6051 ATATATATATTCATCTAATCAAATC-TT-AGTCACAATGGATTTA-AGGATTTATTTTTACCG-G
196 ATATCTATATTCATCTAATCAAATCTTTCAGCCACAATGGATTTACA-GATTTATTTTTA-CGAG
* * * * *
6112 TATCTGAATCTTGTTTTC-ATTTAATTAGATATAAATTCAAAAAAAAAAGGAAAATCGATATTAG
259 CATCTGAATCTTG-TTTCGATTTAATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAG
6176 AAG
323 AAG
6179 TCTG
Statistics
Matches: 1470, Mismatches: 170, Indels: 46
0.87 0.10 0.03
Matches are distributed among these distances:
331 83 0.06
332 51 0.03
333 133 0.09
334 90 0.06
335 635 0.43
336 353 0.24
337 44 0.03
338 81 0.06
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.36
Consensus pattern (336 bp):
TTAAAATTTTTTTGGCGTTGAATTATATGATTTTACTGAGTATTGTGGCAAAAAATTGGGGAAAA
TCTTTTCGGGTCAGTTTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTG
GCTGAAAACGCGTTTCGAGGCCCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCTCGAA
ATATCTATATTCATCTAATCAAATCTTTCAGCCACAATGGATTTACAGATTTATTTTTACGAGCA
TCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAG
CGTGAAAAACA
Found at i:5028 original size:813 final size:806
Alignment explanation
Indices: 3392--4998 Score: 2457
Period size: 813 Copynumber: 2.0 Consensus size: 806
3382 TTGGCGTTGA
*
3392 ATTATATGATTTTACTGAGTATTGTGGCAAAAAATTGGGGAAAATCTTTTCGGGTCAGTTTTTTG
1 ATTACATGATTTTACTGAGTATTGTGGCAAAAAATTGGGGAAAATCTTTTCGGGTCAGTTTTTTG
* *
3457 CAAAATTTTAGCCGAAATCATTTACTAACCATCACGGTTTTTGGCTGAAAACGCGTTTCGGGGCC
66 CAAAATTTTAGCCGAAATCATGTACTAACCATCACGGTTTCTGGCTGAAAACGCGTTTCGGGGCC
* * *
3522 CTGACTCAGTTTTGCATGATTTTTGGCAGAAAGTCCTTGAAATATCTATATTCATCTAACCAAAT
131 CTGACTCAGTTTTGCATAATTTTTGACAGAAAGTCCTCGAAATATCTATATTCATCTAACCAAAT
* *
3587 CTCTCAGCCACATTGGATTTACAGATTTGTTTTTACGAGCATCTGGATCTTGTTTCGATTTAATT
196 CTCTCAGCCACACTGGATTTACAGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATT
* *
3652 ACAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGGAAAACCCTAAAATATTTTT
261 ACAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACACTAAAATATTTTT
3717 GGCATTGAATTATATGATTTTACTGAGTATTGTGGCAAAAAATTGGGGAAAATCTTTTCGGGTCA
326 GGCATTGAATTATATGATTTTACTGAGTATTGTGGCAAAAAATTGGGGAAAATCTTTTCGGGTCA
* * * *
3782 GTTTTTTGCAAAATTTTAGCCGAAATCATGTACTTCGCGGTTTTTGGCTGAAAAGGCGTTTCGAG
391 GTTCTTTGCAAAATTTTAGCCGAAAGCATGTACTTCACGGTTTTTAGCTGAAAAGGCGTTTCGAG
* *
3847 GACTTGACTCAGTTTTGCATGATTTTTGGCAAAAACACTCCTAGAAATATCTGTACTCATCTAAG
456 GACCTGACTCAGTTTTGCATGATTTTTGGCAAAAACACTCCTAGAAATATCGGTACTCATCTAAG
*
3912 CAAATCTCTCAGCCACATTGGATTTACAGATTTGTTTGTACGAGCATCTGGATCTTGTTTCGATT
521 AAAATCTCTCAGCCACATTGGATTTACAGATTTGTTTGTACGAGCATCTGGATCTTGTTTCGATT
* * *
3977 TAATTAGAAATAAATTTAGAAAAAATGGAAAAAACGATATTAGAAGCATGGAAAACCCTAAAATA
586 TAATTAGAAAGAAATTTAGAAAAAATGGAAAAAACGATATTAGAAGCATGAAAAACACTAAAATA
** *
4042 TTTCTGGCATTGAATTATATGATTATTCTGAGTATTGTGGCAAAAAATCGCGAGAAATCTTTTCG
651 TTTCTAACATTGAATTATATGATTATTCTGAGTATTGTGGCAAAAAATCGCGAGAAAACTTTTCG
* * *
4107 GGTCAGTTTTTTGCAAAATTTTAGTCGAAATCGTGTACTAATCATCAAGGTTTTTGGTTGAAAAC
716 GGTCAGTTTTTTGCAAAATTTTAGTCGAAATCGTGTACTAACCATCAAGGTTTTTGGATAAAAAC
* * ***
4172 GCGTTTTTGGTTAAAATTTTTTTGGCGTT
781 GCG-TTTTCG-TAAAATCTGACT-GCGTT
*
4201 GAATTATATGATTTTACTGAGTATTGTGGCAAAAAATTGGGGAAAATCTTTTCGGGTCAGTTTTT
1 --ATTACATGATTTTACTGAGTATTGTGGCAAAAAATTGGGGAAAATCTTTTCGGGTCAGTTTTT
*
4266 TGCAAAATTTTAGCCGAAATCATGTACTAACCATCACGGTTTCTGGCTGAAAACGTGTTTCGGGG
64 TGCAAAATTTTAGCCGAAATCATGTACTAACCATCACGGTTTCTGGCTGAAAACGCGTTTCGGGG
*
4331 CCCTGACTCAGTTTTGCATAATTTTTGACAGAAAGTCTTCTCGAAATATCTATATTCATCTAATC
129 CCCTGACTCAGTTTTGCATAATTTTTGACAGAAAGTC--CTCGAAATATCTATATTCATCTAACC
4396 AAATCTCTCAGCCACACTGGATTTACAGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTT
192 AAATCTCTCAGCCACACTGGATTTACAGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTT
* * * * *
4461 AATTAGAAATAAATTCAGAAAAAATTGGAAAAACGATATTCGAAGCGTGAAAAACATTAAAATTT
257 AATTACAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACACTAAAATAT
*
4526 TTTTGGCGTTGAATTATATGATTTTACTGAGTATTGTGGCAAAAAATTGGGGAAAATCTTTTCGG
322 TTTTGGCATTGAATTATATGATTTTACTGAGTATTGTGGCAAAAAATTGGGGAAAATCTTTTCGG
* *
4591 GTTAGTTCTTTGCAAAATTTTAGCCGAAAGCGTGTACTAACCATCACGGTTTTTAGCTGAAAAGG
387 GTCAGTTCTTTGCAAAATTTTAGCCGAAAGCATGTACT-----TCACGGTTTTTAGCTGAAAAGG
* * *
4656 CGTTTCGAGGCCCTGACTCAGTTTTGCATGATTTTTGGCGAAAAGACTCCTAGAAATATCGGTAC
447 CGTTTCGAGGACCTGACTCAGTTTTGCATGATTTTTGGCAAAAACACTCCTAGAAATATCGGTAC
* * * *
4721 TCATCTAAGAAAATCTTTCAGCCATATTGGATTTACATATTTGTTTTTACGAGCATCTGGATCTT
512 TCATCTAAGAAAATCTCTCAGCCACATTGGATTTACAGATTTGTTTGTACGAGCATCTGGATCTT
* **
4786 GTTTCGATTTAATTAGAAAGAAATTTAGAAAAAAATGG-AAAAGCGATATTAGAAGTGTGAAAAA
577 GTTTCGATTTAATTAGAAAGAAATTTAG-AAAAAATGGAAAAAACGATATTAGAAGCATGAAAAA
* * * * * * *
4850 CATTAAAATTTTTTTAAACGTTGAATTATATGATT-TTACTGAGTATTTTGGCAAAAAAATTGGG
641 CACTAAAATATTTCT-AACATTGAATTATATGATTATT-CTGAGTATTGTGGC-AAAAAATCGCG
* * *
4914 A-AAAACTTTTCGGGTCAGTTTTTTTTTCAAAATTTTAGAT-GAAATCGTGTATTAACCATCACG
703 AGAAAACTTTTCGGGTCAG--TTTTTTGCAAAATTTTAG-TCGAAATCGTGTACTAACCATCAAG
4977 GTTTTTGGATAAAAACGCGTTT
765 GTTTTTGGATAAAAACGCGTTT
4999 CGAGGCTCTG
Statistics
Matches: 727, Mismatches: 55, Indels: 19
0.91 0.07 0.02
Matches are distributed among these distances:
811 160 0.22
813 243 0.33
818 202 0.28
819 54 0.07
820 13 0.02
821 54 0.07
822 1 0.00
ACGTcount: A:0.32, C:0.14, G:0.19, T:0.36
Consensus pattern (806 bp):
ATTACATGATTTTACTGAGTATTGTGGCAAAAAATTGGGGAAAATCTTTTCGGGTCAGTTTTTTG
CAAAATTTTAGCCGAAATCATGTACTAACCATCACGGTTTCTGGCTGAAAACGCGTTTCGGGGCC
CTGACTCAGTTTTGCATAATTTTTGACAGAAAGTCCTCGAAATATCTATATTCATCTAACCAAAT
CTCTCAGCCACACTGGATTTACAGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATT
ACAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGTGAAAAACACTAAAATATTTTT
GGCATTGAATTATATGATTTTACTGAGTATTGTGGCAAAAAATTGGGGAAAATCTTTTCGGGTCA
GTTCTTTGCAAAATTTTAGCCGAAAGCATGTACTTCACGGTTTTTAGCTGAAAAGGCGTTTCGAG
GACCTGACTCAGTTTTGCATGATTTTTGGCAAAAACACTCCTAGAAATATCGGTACTCATCTAAG
AAAATCTCTCAGCCACATTGGATTTACAGATTTGTTTGTACGAGCATCTGGATCTTGTTTCGATT
TAATTAGAAAGAAATTTAGAAAAAATGGAAAAAACGATATTAGAAGCATGAAAAACACTAAAATA
TTTCTAACATTGAATTATATGATTATTCTGAGTATTGTGGCAAAAAATCGCGAGAAAACTTTTCG
GGTCAGTTTTTTGCAAAATTTTAGTCGAAATCGTGTACTAACCATCAAGGTTTTTGGATAAAAAC
GCGTTTTCGTAAAATCTGACTGCGTT
Found at i:5460 original size:669 final size:665
Alignment explanation
Indices: 4182--6179 Score: 2787
Period size: 669 Copynumber: 3.0 Consensus size: 665
4172 GCGTTTTTGG
4182 TTAAAATTTTTTTGGCGTTGAATTATATGATTTTACTGAGTATTGTGGCAAAAAATTGGGGAAAA
1 TTAAAATTTTTTTGGCGTTGAATTATATGATTTTACTGAGTATTGTGGCAAAAAATT-GGGAAAA
* * *
4247 TCTTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCGAAATCATGTACTAACCATCACGGTTTCTGG
65 TCTTTTCGGGTCAGTTTTTTACAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGG
* * * * *
4312 CTGAAAACGTGTTTCGGGGCCCTGACTCAGTTTTGCATAATTTTTGACAGAAAGTCTTCTCGAAA
130 CTGAAAACGCGTTTCGGGGCCCTGACTCAGTTTTGCATGATTTTGGA-AGAAAGACTCCTCGAAA
*
4377 TATCTATATTCATCTAATCAAATCTCTCAGCCACACTGGATTTACAGATTTGTTTTTACGAGCAT
194 TATCTATATTCATCTAATCAAATCTCTCAGCCACAATGGATTTACAGATTTGTTTTTACGAGCAT
* *
4442 CTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAATTGGAAAAACGATATTCGAAGC
259 CTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGC
*
4507 GTGAAAAACATTAAAATTTTTTTGGCGTTGAATTATATGATTTTACTGAGTATTGTGGCAAAAAA
324 GTGAAAAACATT-AAATTTTTTTGGCGTTGAATTATATGATTTTACTGAGTATTATGGC-AAAAA
* *
4572 TTGGGGAAAATCTTTTCGGGTTAGTTCTTTGCAAAATTTTAGCCGAAAGCGTGTACTAACCATCA
387 TTGGGGAAAATCTTTTCGGGTCAGTT-TTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCA
* *
4637 CGGTTTTTAGCTGAAAAGGCGTTTCGAGGCCCTGACTCAGTTTTGCATGATTTTTGGC-GAAAAG
451 CGGTTTTTGGCTGAAAACGCGTTTCGAGGCCCTGACTCAGTTTTGCATGATTTTTGGCAG-AAAG
* ** * ** * * * *
4701 ACTCCTAGAAATATCGGTACTCATCTAAGAAAATCTTTCAGCCATATTGGATTTACATATTTGTT
515 ACTCCTCGAAATATCTATATTCATCTAATCAAATCTTTCAGCCACAATGGATTTACAAATTTATT
* * *
4766 TTTACGAGCATCTGGATCTTGTTTCGATTTAATTAGAAAGAAATTTAGAAAAAAATGGAAAAGCG
580 TTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAAAGAAATTTAGAAAAAAATGGAAAAACG
*
4831 ATATTAGAAGTGTGAAAAACA
645 ATATTAGAAGTATGAAAAACA
** *
4852 TTAAAATTTTTTTAAACGTTGAATTATATGATTTTACTGAGTATTTTGGCAAAAAAATTGGGAAA
1 TTAAAATTTTTTT-GGCGTTGAATTATATGATTTTACTGAGTATTGTGGC-AAAAAATTGGGAAA
* * ** *
4917 AACTTTTCGGGTCAGTTTTTTTTTCAAAATTTTAGATGAAATCGTGTATTAACCATCACGGTTTT
64 ATCTTTTCGGGTCAG--TTTTTTACAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTT
* * * *
4982 TGGATAAAAACGCGTTTCGAGGCTCTGACTCAGTTTTGCATGATTTTGGAAGAAAGACTCCTCGA
127 TGGCTGAAAACGCGTTTCGGGGCCCTGACTCAGTTTTGCATGATTTTGGAAGAAAGACTCCTCGA
** * * *
5047 GGTATATATATTCATCTAATCAAATCT-T-AGCCACAATGGATTTA-AGGATTTATTTTTACCAG
192 AATATCTATATTCATCTAATCAAATCTCTCAGCCACAATGGATTTACA-GATTTGTTTTTACGAG
* * *
5109 TATCTGAATCTTGTTTCGATTTAATTAGAAATAATTTCAGAAAAAAATGGAAAATCGATATTAGA
256 CATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGA
** * * *
5174 AGCGTGAAAAAACCCT-AATTTTTTTGGCATTGAATTATATTATTTTTCTGAGTATTATGGCAAA
321 AGCGTG-AAAAACATTAAATTTTTTTGGCGTTGAATTATATGATTTTACTGAGTATTATGGCAAA
*
5238 AGATTGGGGGAAATCTTTTCGGGTCAGCTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCA
385 A-ATTGGGGAAAATCTTTTCGGGTCAG-TTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCA
5303 TCACGGTTTTTGGCTGAAAACGCGTTTCGAGGCCCTGACTCAGTTTTGCATGATTTTTGGCAGAA
448 TCACGGTTTTTGGCTGAAAACGCGTTTCGAGGCCCTGACTCAGTTTTGCATGATTTTTGGCAGAA
*
5368 AGACTTCTCGAAATATCTATATTCATCTAATCAAATCTTTCAGCCACAATGGATTTACAAATTTA
513 AGACTCCTCGAAATATCTATATTCATCTAATCAAATCTTTCAGCCACAATGGATTTACAAATTTA
* * * *
5433 TTTTTACGAGTATCCGAATCTTGTTTCGATTTAATTAGAAATG-TATTGTGGCAAAAAATGGAAA
578 TTTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAAA-GAAATT-TAGAAAAAAATGGAAA
* *
5497 AACGATATTAGAAGCATGAAAAACC
641 AACGATATTAGAAGTATGAAAAACA
* * * * *
5522 CTAAAATATTCTTGGCATTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATTGGGAGAAA
1 TTAAAATTTTTTTGGCGTTGAATTATATGATTTTACTGAGTATTGTGGCAAAAAATTGGGA-AAA
* * *
5587 TCTTTACGGGTCAGTTTTTTACAAAATTTTAGCCAAAATCGTGTACTAACCATCAAGGTTTTTGG
65 TCTTTTCGGGTCAGTTTTTTACAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGG
* * *
5652 CTGAAAACGCGTTCCGGGGCCCTGACTCAGTTTTGCATGATTTTTGGCAGACAGACTCCTCGAAA
130 CTGAAAACGCGTTTCGGGGCCCTGACTCAGTTTTGCATGA-TTTTGGAAGAAAGACTCCTCGAAA
* *
5717 TATCTATATTCATCTAACCAAATCTCTCAGCCACATTGGATTTACAGATTTGTTTTTACGAGCAT
194 TATCTATATTCATCTAATCAAATCTCTCAGCCACAATGGATTTACAGATTTGTTTTTACGAGCAT
*
5782 CTGAATCTTGTTTCGATTTAATCAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGC
259 CTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGC
* *
5847 GTGAAAAACATTAAAATTTTTTTGGCGTTGACTTATATGATTTTACTTAGTATTATGGCACAAAA
324 GTGAAAAACATT-AAATTTTTTTGGCGTTGAATTATATGATTTTACTGAGTATTATGGCA-AAAA
* * * * * * *
5912 TTGGGGAAAAACTTTTCGGTTCGGTTTTTTTTCAAAATTTTAGCTGAAATCATGTA-TTACCATC
387 TTGGGGAAAATCTTTTCGGGTCAG--TTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATC
* * * * *
5976 ACGGTTTTTGGCTAAAAACGCGTTTCGGGGCTCTGGCTCAGTTTTGCATGATTTTTGGAAGAAAG
450 ACGGTTTTTGGCTGAAAACGCGTTTCGAGGCCCTGACTCAGTTTTGCATGATTTTTGGCAGAAAG
* * *
6041 ACTCCTCGAAATATATATATTCATCTAATCAAATC-TT-AGTCACAATGGATTTA-AGGATTTAT
515 ACTCCTCGAAATATCTATATTCATCTAATCAAATCTTTCAGCCACAATGGATTTACA-AATTTAT
* * * * *
6103 TTTTACCG-GTATCTGAATCTTGTTTTC-ATTTAATTAGATATAAATTCAAAAAAAAAAGGAAAA
579 TTTTA-CGAGTATCTGAATCTTG-TTTCGATTTAATTAGAAAGAAATTTAGAAAAAAATGGAAAA
*
6166 TCGATATTAGAAGT
642 ACGATATTAGAAGT
6180 CTG
Statistics
Matches: 1172, Mismatches: 132, Indels: 50
0.87 0.10 0.04
Matches are distributed among these distances:
667 80 0.07
668 84 0.07
669 363 0.31
670 261 0.22
671 224 0.19
672 75 0.06
673 85 0.07
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.36
Consensus pattern (665 bp):
TTAAAATTTTTTTGGCGTTGAATTATATGATTTTACTGAGTATTGTGGCAAAAAATTGGGAAAAT
CTTTTCGGGTCAGTTTTTTACAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTTTTTGGC
TGAAAACGCGTTTCGGGGCCCTGACTCAGTTTTGCATGATTTTGGAAGAAAGACTCCTCGAAATA
TCTATATTCATCTAATCAAATCTCTCAGCCACAATGGATTTACAGATTTGTTTTTACGAGCATCT
GAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAGAAGCGT
GAAAAACATTAAATTTTTTTGGCGTTGAATTATATGATTTTACTGAGTATTATGGCAAAAATTGG
GGAAAATCTTTTCGGGTCAGTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACGGTT
TTTGGCTGAAAACGCGTTTCGAGGCCCTGACTCAGTTTTGCATGATTTTTGGCAGAAAGACTCCT
CGAAATATCTATATTCATCTAATCAAATCTTTCAGCCACAATGGATTTACAAATTTATTTTTACG
AGTATCTGAATCTTGTTTCGATTTAATTAGAAAGAAATTTAGAAAAAAATGGAAAAACGATATTA
GAAGTATGAAAAACA
Done.