Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01018182.1 Corchorus olitorius cultivar O-4 contig18215, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 59235
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Found at i:627 original size:119 final size:119
Alignment explanation
Indices: 407--649 Score: 355
Period size: 119 Copynumber: 2.0 Consensus size: 119
397 TATTTTTACC
* *
407 AGTATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAAATGGAAAAACGATATT
1 AGTATCTGAATCTTGTTTCGATTAAAATAGAAATAAATTCAGAAAAAAAATGGAAAAACGATATT
* **
472 AGAAGCGTGAAAAACATTAAATTTTTTATGGCGTTGAATTATATGATTTTACTG
66 AGAAGCGTGAAAAACACTAAATACTTTATGGCGTTGAATTATATGATTTTACTG
* ** *
526 AGTATCTGAATCTTGTTTCGATTAAAATAGAAATAAATTC-GGAAAAATTTGGAAAAATGATATT
1 AGTATCTGAATCTTGTTTCGATTAAAATAGAAATAAATTCAGAAAAAAAATGGAAAAACGATATT
* *
590 AGAAGCGTGAAAAAACCCTATAATACTTT-TGGGGTTGAATTATATGATTTTACTG
66 AGAAGCGTG-AAAAACACTA-AATACTTTATGGCGTTGAATTATATGATTTTACTG
645 AGTAT
1 AGTAT
650 TGTGGCAAAA
Statistics
Matches: 111, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
118 29 0.26
119 76 0.68
120 6 0.05
ACGTcount: A:0.40, C:0.08, G:0.17, T:0.35
Consensus pattern (119 bp):
AGTATCTGAATCTTGTTTCGATTAAAATAGAAATAAATTCAGAAAAAAAATGGAAAAACGATATT
AGAAGCGTGAAAAACACTAAATACTTTATGGCGTTGAATTATATGATTTTACTG
Found at i:1365 original size:336 final size:333
Alignment explanation
Indices: 518--3570 Score: 4078
Period size: 335 Copynumber: 9.2 Consensus size: 333
508 AATTATATGA
* * * *
518 TTTTACTGAGTATCTGAATCTTGTTTCGATTAAAATAGAAATAAATTCGGAAAAATTTGGAAAAA
1 TTTTAC-GAGTATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAA-ATGGAAAAA
* * * ** *
583 TGATATTAGAAGCGTGAAAAAACCCTATAATACTTTTGGGGTTGAATTATATGATTTTACTGAGT
64 CGATATTAGAAGCGTG-AAAAACCCTAAAATATTTTTGGCATTGAATTATATGATTTTTCTGAGT
* *
648 ATTGTGGCAAAAAAATTGGGGAAAACCTTTTCGGGTCAGTTTTTTGCAAAATTTTAGCTGAAATC
128 ATTGTGGC-AAAAAATTGGGG-AAATCTTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCGAAATC
* * * * *
713 GTG---------T-ACGGTTTTTGGCTAAAAACACGTTTCGGGACTCTGGCTCAGTTTTGCATGA
191 GTGTACTAACCATCACGGTTTTTGGCTGAAAACGCGTTTCGGGGCCCTGACTCAGTTTTGCATGA
* * *
768 TTTTTGGAAGAAAGACTCCTCGAAATATATATATTCATCTAATCAAATCT-T-AGGCACAATGGA
256 TTTTTGGCAGAAAGACTCCTCGAAATATCTATATTCATCTAATCAAATCTCTCAGCCACAATGGA
*
831 TTTAAGGATTTAT
321 TTTACGGATTTAT
* * *
844 TTTTACCAGTATATGAATCTTGTTTCGATTTAATTAGAAATAAAATCAGAAAAAATGGAAAAACG
1 TTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAATGGAAAAACG
* *
909 ATATTAGAAGTC-TGAAAAACACTAAAATAATTTTGGCATTGAATTATATGATTTTTCTGAGTAT
66 ATATTAGAAG-CGTGAAAAACCCTAAAATATTTTTGGCATTGAATTATATGATTTTTCTGAGTAT
* ** * *
973 TATGGCAAACATTTTGGGGAAATCTTTTCGGGTCAGCTTTTTGCAAAATTTTAGCCGAAATCATG
130 TGTGGCAAA-AAATTGGGGAAATCTTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCGAAATCGTG
*
1038 TACTAACCATCACGGTTTTTGGCTGAAAACGCGTTTCGGGGCCATGACTCAGTTTTGCATGATTT
194 TACTAACCATCACGGTTTTTGGCTGAAAACGCGTTTCGGGGCCCTGACTCAGTTTTGCATGATTT
* * *
1103 TTGGCAGAAAGTCTTCTCGAAATATCTATATTTATCTAATCAAATCTCTCAGCCACAATGGATTT
259 TTGGCAGAAAGACTCCTCGAAATATCTATATTCATCTAATCAAATCTCTCAGCCACAATGGATTT
1168 ACGGATTTAT
324 ACGGATTTAT
** **
1178 TTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAAATTTATTGTGGCAAAAAATGGAAAAA
1 TTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAAATAAATT-CAG-AAAAAATGG-AAAA
* * *
1243 ACGATATTAGAAGCATGGAAAACCCTAAAATATTTTTGGCATTGAATTATTTGA-TTTTCTGAGT
63 ACGATATTAGAAGCGTGAAAAACCCTAAAATATTTTTGGCATTGAATTATATGATTTTTCTGAGT
* * *
1307 ATTGTGGCAAAAACTTGCGAGAAATCTTTTCGGGTCAGTTTTCTGCAAAATTTTAGCCGAAATCG
128 ATTGTGGCAAAAAATTG-GGGAAATCTTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCGAAATCG
* *
1372 TGTACTAACCATCACGGTTTTTGGCTGAAAACGCGTTTCGGGGCCTTGACTCAGTTTTGCATAAT
192 TGTACTAACCATCACGGTTTTTGGCTGAAAACGCGTTTCGGGGCCCTGACTCAGTTTTGCATGAT
* ** *
1437 TTTTGGCAGAAAGACTCCTCGAAATATCTGTATTCATCTACCCAAATCTCTCAGCCACATTGGAT
257 TTTTGGCAGAAAGACTCCTCGAAATATCTATATTCATCTAATCAAATCTCTCAGCCACAATGGAT
* *
1502 TTACAGATTCAT
322 TTACGGATTTAT
1514 TTTTA-GAAGTATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAATGGAAAAAC
1 TTTTACG-AGTATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAATGGAAAAAC
* * *
1578 GATATTAGAAGCGTGAAAAA-CATTAAAT-TTTATATGGCGTTGAATTATATGATTTTTCTGAGT
65 GATATTAGAAGCGTGAAAAACCCTAAAATATTT-T-TGGCATTGAATTATATGATTTTTCTGAGT
*
1641 ATTGTGGCAAAAAATTGGGGAAAACCTTTTCGGGTCAGTTTTTTTGCAAAATTTTAGCCGAAATC
128 ATTGTGGCAAAAAATTGGGG-AAATCTTTTCGGGTCAG-TTTTTTGCAAAATTTTAGCCGAAATC
* * * * *
1706 GTGTACTTACCATCAGGGTTTTTGGCTGAAAACACGTTTCGAGGCCCTGACTCAGATTTGCATGA
191 GTGTACTAACCATCACGGTTTTTGGCTGAAAACGCGTTTCGGGGCCCTGACTCAGTTTTGCATGA
* * * * * * * *
1771 TTTTTGGCAAAAAGACTCCTAGAAATATCTGTATTCATCTAACCAAATCTCACTGCCACATTGAA
256 TTTTTGGCAGAAAGACTCCTCGAAATATCTATATTCATCTAATCAAATCTCTCAGCCACAATGGA
*
1836 TTTACAGATTTAT
321 TTTACGGATTTAT
* * * *
1849 TTTTACGAGCATCTGGATCTTGTTTCGATTTAAATATAAATAAATTCAGAAAATAATGGAAAAAC
1 TTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAA-AATGGAAAAAC
* ** ** *
1914 GATATTAGAAGCATGAAAAACATTAAAATATTTTTGGTGTTGAATTATATGATTTTACTGAGTAT
65 GATATTAGAAGCGTGAAAAACCCTAAAATATTTTTGGCATTGAATTATATGATTTTTCTGAGTAT
*
1979 TGTGGCGAAAAATTGGGGAAATTCTTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCGAAATCGTG
130 TGTGGCAAAAAATTGGGGAAA-TCTTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCGAAATCGTG
* * * * * * ** * *
2044 TATTGTTA-TATCACGATTTTTGGCTAAAAACGCGTTTC-GAGTTCTGCCTCAGTTTTGCAAGAT
194 TA--CTAACCATCACGGTTTTTGGCTGAAAACGCGTTTCGGGGCCCTGACTCAGTTTTGCATGAT
* * *
2107 TTTTGGAAGAAAGACTCATCGAAATATATATATTCATCTAATCAAATCT-T-AGCCACAATGGAT
257 TTTTGGCAGAAAGACTCCTCGAAATATCTATATTCATCTAATCAAATCTCTCAGCCACAATGGAT
*
2170 TTAAGGATTTAT
322 TTACGGATTTAT
* *
2182 TTTTACCAGTATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAATGGAAAATC
1 TTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAG-AAAAAATGGAAAAAC
* *
2247 GATATTAGAAGCGTTAAAAACCCTAAAATATTTTTGGCATTGAATTATATGATTTTTCT-AATAA
65 GATATTAGAAGCGTGAAAAACCCTAAAATATTTTTGGCATTGAATTATATGATTTTTCTGAGT-A
* * *
2311 TTATGGCAAAAAATTGGGAAAATCTTTTCGGGTCAGCTTTTTGCAAAATTTTAGCCGAAATCG-G
129 TTGTGGCAAAAAATTGGGGAAATCTTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCGAAATCGTG
* * * *
2375 --GT---CATCACGGTTTTTTGCTGAAAACGCATTTCGGGGCCCTGACTTAGTTTTGCATGATTT
194 TACTAACCATCACGGTTTTTGGCTGAAAACGCGTTTCGGGGCCCTGACTCAGTTTTGCATGATTT
* *
2435 TTGGCAGATAGACTTCTCGAAATATCTATATTCATCTAATCAAATCTCTCAGCCACAATGGATTT
259 TTGGCAGAAAGACTCCTCGAAATATCTATATTCATCTAATCAAATCTCTCAGCCACAATGGATTT
2500 ACGGATTTAT
324 ACGGATTTAT
** ** *
2510 TTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAAATGTATTGTGGCAAAAAATAGAAAAA
1 TTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAAATAAATT-CAG-AAAAAAT-GGAAAA
* *
2575 ACGATATTAGAAGCATGAAAAAACCCAAAAATATTTTTGGCATTGAATTATATGATTTTTCTGAG
63 ACGATATTAGAAGCGTG-AAAAACCCTAAAATATTTTTGGCATTGAATTATATGATTTTTCTGAG
*
2640 TATTGTGGCAAAAAAATGGGGTAAATCTTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCGAAATC
127 TATTGTGGCAAAAAATTGGGG-AAATCTTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCGAAATC
*
2705 GTG---TAACCATCACGGTTTTTGGCTGAAAACGCTTTTCGGGGCCCTGACTCAGTTTTGCATGA
191 GTGTACTAACCATCACGGTTTTTGGCTGAAAACGCGTTTCGGGGCCCTGACTCAGTTTTGCATGA
* * * * * * *
2767 TTTTTCGCAGAAAGACTCCTCGAAATATATGTATTCATCTAACCAAATCTCTCAACCATATTGGA
256 TTTTTGGCAGAAAGACTCCTCGAAATATCTATATTCATCTAATCAAATCTCTCAGCCACAATGGA
** *
2832 TTTACAAATTTGT
321 TTTACGGATTTAT
* * *
2845 TTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAAATAAATGCAGAAAAAAATGG-ACATC
1 TTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAG-AAAAAATGGAAAAAC
** * * * *
2909 GATATTAGAAGCGTGAAAAACATTAAAATTTTTTTGGCGTTGAATTATATGATTTTACTGAGTTT
65 GATATTAGAAGCGTGAAAAACCCTAAAATATTTTTGGCATTGAATTATATGATTTTTCTGAGTAT
* * * * *
2974 TGTGGCAAAAAATTGGGCAAAAACTTTTTGGGTCAGTTTTTTGCAAAATTTTAGCTGAGATCGTG
130 TGTGGCAAAAAATTGGG-GAAATCTTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCGAAATCGTG
* * * *
3039 TACTAACCATCACAGTTTTTGGCTGAAAACGCTTTTCGGTGCTCTGACTCAGTTTTGCATGATTT
194 TACTAACCATCACGGTTTTTGGCTGAAAACGCGTTTCGGGGCCCTGACTCAGTTTTGCATGATTT
* *
3104 TTGGAAGAAA-ACTCCTCGAAATATTTATATTCATCTAATCAAATCT-T-AGCCACAATGGATTT
259 TTGGCAGAAAGACTCCTCGAAATATCTATATTCATCTAATCAAATCTCTCAGCCACAATGGATTT
*
3166 AAGGATTTAT
324 ACGGATTTAT
* * * * *
3176 TTTTACCAGTATCTGAATCTTGTTTCGATTTAATTATAATTAAATTCATAAAAAATGGAAAATCG
1 TTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAATGGAAAAACG
*
3241 --A-TAGAAGCGTGAAAAACCGTAAAATATTTTTGGCATTGAATTATATGATTTTTCTGAGTATT
66 ATATTAGAAGCGTGAAAAACCCTAAAATATTTTTGGCATTGAATTATATGATTTTTCTGAGTATT
3303 GTGGCAAAAAATTGGGAGAAATCTTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCGAAATCGTGT
131 GTGGCAAAAAATTGGG-GAAATCTTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCGAAATCGTGT
* *
3368 ACTAACCATCACGGTTTTTGGCTGAAAACGCGTTTCGGTGCCCTGACTCCGTTTTGCATGATTTT
195 ACTAACCATCACGGTTTTTGGCTGAAAACGCGTTTCGGGGCCCTGACTCAGTTTTGCATGATTTT
* * * *
3433 TGGCAGAAAGACTCCTCGAAATATCTGTATTCATCTAACCAAATCTCTCAGCCATATTGGATTTA
260 TGGCAGAAAGACTCCTCGAAATATCTATATTCATCTAATCAAATCTCTCAGCCACAATGGATTTA
* *
3498 CAGATTTGT
325 CGGATTTAT
*
3507 TTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCTA-AAAAAATGGAAAAAC
1 TTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTC-AGAAAAAATGGAAAAAC
3571 AATACCTCAG
Statistics
Matches: 2403, Mismatches: 269, Indels: 105
0.87 0.10 0.04
Matches are distributed among these distances:
322 45 0.02
323 56 0.02
324 21 0.01
325 68 0.03
326 69 0.03
327 3 0.00
328 250 0.10
329 42 0.02
330 29 0.01
331 310 0.13
332 204 0.08
333 224 0.09
334 194 0.08
335 463 0.19
336 361 0.15
337 61 0.03
338 3 0.00
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.36
Consensus pattern (333 bp):
TTTTACGAGTATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAATGGAAAAACG
ATATTAGAAGCGTGAAAAACCCTAAAATATTTTTGGCATTGAATTATATGATTTTTCTGAGTATT
GTGGCAAAAAATTGGGGAAATCTTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCGAAATCGTGTA
CTAACCATCACGGTTTTTGGCTGAAAACGCGTTTCGGGGCCCTGACTCAGTTTTGCATGATTTTT
GGCAGAAAGACTCCTCGAAATATCTATATTCATCTAATCAAATCTCTCAGCCACAATGGATTTAC
GGATTTAT
Found at i:4073 original size:528 final size:526
Alignment explanation
Indices: 3121--4098 Score: 1396
Period size: 532 Copynumber: 1.8 Consensus size: 526
3111 AAAACTCCTC
* * * * * * *
3121 GAAATATTTATATTCATCTAATCAAATCTTAGCCACAATGGATTTAAGGATTTATTTTTACCAGT
1 GAAATATCTATATTCAGCTAACCAAATCTCACCCACAATGGATTTAAGGATTTATTTTTACAAGA
* * * * *
3186 ATCTGAATCTTGTTTCGATTTAATTATAATTAAATTCATAAAAAATGGAAAATCGATAGAAGCGT
66 ATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAAAAAAAATGGAAAAACGATACAAGCGT
* *
3251 GAAAAACCGTAAAATATTTTTGGCATTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAATT
131 GAAAAACAGTAAAATATTTTTGGCATTGAATTATATGATTTTTCTGAGTATTGTGGAAAAAAATT
* * *
3316 GGGAGAAATCTTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAACCATCACG
196 GGGAGAAAACTTTTCGGATCAGTTTTTTGCAAAATTTTAGCCAAAATCGTGTACT-A-CATCACG
* * * * * **
3381 GTTTTTGGCTGAAAACGCGTTTCGGTGCCCTGACTCCGTTTTGCATGATTTTTGGCAGAAAGACT
259 ATTTGTGGCTAAAAACGCGTTTCGGTGCCCTGACTCAGTCTTGCATGATTTTCAGCAGAAAGACT
* * * *
3446 CCTCGAAATATCTGTATTCATCTAACCAAATCTCTCAGCCATATTGGATTTACAGATTTGTTTTT
324 CCTCGAAATATCTATATTCAGCTAACCAAA-CTCTCACCCACATTGGATTTACAGATTTGTTTTT
3511 ACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCTA-AAAAAATGGAAAAACAATA
388 ACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTC-AGAAAAAATGGAAAAACAATA
3575 CCTCAGTATTGTGGCTAAAAACGCGTTTCGAGGCCCTACCTCAGTCTTGCATGATTTTACAGAGA
452 CCTCAGTATTGTGGCTAAAAACGCGTTTCGAGGCCCTACCTCAGTCTTGCATGATTTTACAGAGA
3640 AAGGCTGCTT
517 AAGGCTGCTT
* * * * *
3650 GAAATATCTGTATTCAGCTAACCAAATCTCACCCACATTGGATTTACGGGTTTGTTTTTACAAGA
1 GAAATATCTATATTCAGCTAACCAAATCTCACCCACAATGGATTTAAGGATTTATTTTTACAAGA
3715 ATCTGAATCTT-TTTCGATTTAATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTACAA
66 ATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCA-AAAAAAATGGAAAAACG--A-TACAA
* * * *
3779 GCGTGAAAAACATTAAAATTTTTTTTGCGTTGAATTATATGATTTTTCTGAGTATTGTGGAAAAA
127 GCGTGAAAAACAGTAAAATATTTTTGGCATTGAATTATATGATTTTTCTGAGTATTGTGGAAAAA
*
3844 AATTGGG-GAAAAACTTTTCGGATCAGTTTTTTGCAAAATTTTAGCCAAAATCGTGTACGT-TAT
192 AATTGGGAG-AAAACTTTTCGGATCAGTTTTTTGCAAAATTTTAGCCAAAATCGTGTAC-TACAT
3907 CACGATTTGTGGCTAAAAACGCGTTTCGAG-GCCCT-ACCTCAGTCTTGCATGATTTTACAG-AG
255 CACGATTTGTGGCTAAAAACGCGTTTCG-GTGCCCTGA-CTCAGTCTTGCATGATTTT-CAGCAG
* * * * *
3969 AAAGGCTGCTTGAAATATCTATATTCAGCTAACCGAA-TCTCACCCACATTGGATTTACAGGTTT
317 AAAGACTCCTCGAAATATCTATATTCAGCTAACCAAACTCTCACCCACATTGGATTTACAGATTT
4033 GTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAATGGAAAAA
382 GTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAATGGAAAAA
4098 C
447 C
4099 GATATTAGAA
Statistics
Matches: 396, Mismatches: 43, Indels: 21
0.86 0.09 0.05
Matches are distributed among these distances:
527 1 0.00
528 112 0.28
529 80 0.20
530 82 0.21
531 4 0.01
532 116 0.29
533 1 0.00
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.34
Consensus pattern (526 bp):
GAAATATCTATATTCAGCTAACCAAATCTCACCCACAATGGATTTAAGGATTTATTTTTACAAGA
ATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAAAAAAAATGGAAAAACGATACAAGCGT
GAAAAACAGTAAAATATTTTTGGCATTGAATTATATGATTTTTCTGAGTATTGTGGAAAAAAATT
GGGAGAAAACTTTTCGGATCAGTTTTTTGCAAAATTTTAGCCAAAATCGTGTACTACATCACGAT
TTGTGGCTAAAAACGCGTTTCGGTGCCCTGACTCAGTCTTGCATGATTTTCAGCAGAAAGACTCC
TCGAAATATCTATATTCAGCTAACCAAACTCTCACCCACATTGGATTTACAGATTTGTTTTTACG
AGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAATGGAAAAACAATACCTC
AGTATTGTGGCTAAAAACGCGTTTCGAGGCCCTACCTCAGTCTTGCATGATTTTACAGAGAAAGG
CTGCTT
Found at i:4318 original size:331 final size:331
Alignment explanation
Indices: 3586--4574 Score: 1797
Period size: 331 Copynumber: 3.0 Consensus size: 331
3576 CTCAGTATTG
3586 TGGCTAAAAACGCGTTTCGAGGCCCTACCTCAGTCTTGCATGATTTTACAGAGAAAGGCTGCTTG
1 TGGCTAAAAACGCGTTTCGAGGCCCTACCTCAGTCTTGCATGATTTTACAGAGAAAGGCTGCTTG
* * *
3651 AAATATCTGTATTCAGCTAACCAAATCTCACCCACATTGGATTTACGGGTTTGTTTTTACAAGAA
66 AAATATCTATATTCAGCTAACCAAATCTCACCCACATTGGATTTACGGGTTTGTTTTTACGAGCA
*
3716 TCTGAATCTT-TTTCGATTTAATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTACAAG
131 TCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAG-AAAAAATGGAAAAACGATATTAGAAG
*
3780 CGTGAAAAACATTAAAATTTTTTTTGCGTTGAATTATATGATTTTTCTGAGTATTGTGGAAAAAA
195 CGTGAAAAACATTAAAA-TTTTTTTGCGTTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAA
*
3845 ATTGGGGAAAAACTTTTCGGATCAGTTTTTTGCAAAATTTTAGCCAAAATCGTGTACGT---TAT
259 ATTGGGGAAAAACTTTTCGGATCAGTTTTTTGCAAAATTTTAGCCAAAATCGTGTAC-TAACCAT
*
3907 CACGATTTG
323 CACGATTTC
3916 TGGCTAAAAACGCGTTTCGAGGCCCTACCTCAGTCTTGCATGATTTTACAGAGAAAGGCTGCTTG
1 TGGCTAAAAACGCGTTTCGAGGCCCTACCTCAGTCTTGCATGATTTTACAGAGAAAGGCTGCTTG
* *
3981 AAATATCTATATTCAGCTAACCGAATCTCACCCACATTGGATTTACAGGTTTGTTTTTACGAGCA
66 AAATATCTATATTCAGCTAACCAAATCTCACCCACATTGGATTTACGGGTTTGTTTTTACGAGCA
4046 TCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAATGGAAAAACGATATTAGAAGC
131 TCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAATGGAAAAACGATATTAGAAGC
4111 GTGAAAAACATTAAAATTTTTTTGCGTTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAAT
196 GTGAAAAACATTAAAATTTTTTTGCGTTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAAT
* *
4176 TGGGGAAAAACTTTTCAGATCAGTTTTTTGCAAAATTTTATCCAAAATCGTGTACTAACCATCAC
261 TGGGGAAAAACTTTTCGGATCAGTTTTTTGCAAAATTTTAGCCAAAATCGTGTACTAACCATCAC
4241 GATTTC
326 GATTTC
*
4247 TGGCTAAAAACGCGTTTCAAGGCCCTACCTCAGTCTTGCATGATTTTACAGAGAAAGGCTGCTTG
1 TGGCTAAAAACGCGTTTCGAGGCCCTACCTCAGTCTTGCATGATTTTACAGAGAAAGGCTGCTTG
4312 AAATATCTATATTCAGCTAACCAAATCTCACCCACATTGGATTTACGGGTTTGTTTTTACGAGCA
66 AAATATCTATATTCAGCTAACCAAATCTCACCCACATTGGATTTACGGGTTTGTTTTTACGAGCA
4377 TCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAATGGAAAAACGATATTAGAAGC
131 TCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAATGGAAAAACGATATTAGAAGC
4442 GTGAAAAACATTACAAATTTTTTTGCGTTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAA
196 GTGAAAAACATTA-AAATTTTTTTGCGTTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAA
*
4507 TTGGGGAAAAACTTTTCGGATCAGTTTTTTGTAAAATTTTAGCCAAAATCGTGTACTAACCATCA
260 TTGGGGAAAAACTTTTCGGATCAGTTTTTTGCAAAATTTTAGCCAAAATCGTGTACTAACCATCA
4572 CGA
325 CGA
4575 GTATTTAAAT
Statistics
Matches: 637, Mismatches: 17, Indels: 8
0.96 0.03 0.01
Matches are distributed among these distances:
328 1 0.00
329 101 0.16
330 177 0.28
331 242 0.38
332 116 0.18
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.34
Consensus pattern (331 bp):
TGGCTAAAAACGCGTTTCGAGGCCCTACCTCAGTCTTGCATGATTTTACAGAGAAAGGCTGCTTG
AAATATCTATATTCAGCTAACCAAATCTCACCCACATTGGATTTACGGGTTTGTTTTTACGAGCA
TCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAATGGAAAAACGATATTAGAAGC
GTGAAAAACATTAAAATTTTTTTGCGTTGAATTATATGATTTTTCTGAGTATTGTGGCAAAAAAT
TGGGGAAAAACTTTTCGGATCAGTTTTTTGCAAAATTTTAGCCAAAATCGTGTACTAACCATCAC
GATTTC
Found at i:4391 original size:859 final size:858
Alignment explanation
Indices: 2724--4429 Score: 2357
Period size: 859 Copynumber: 2.0 Consensus size: 858
2714 TCACGGTTTT
* * * * *
2724 TGGCTGAAAACGCTTTTCGGGGCCCTGACTCAGTTTTGCATGATTTTTCGCAGAAAGACTCCTCG
1 TGGCTAAAAACGCGTTTCGAGGCCCTGACTCAGTCTTGCATGATTTTACGCAGAAAGACTCCTCG
* * *
2789 AAATATATGTATTCATCTAACCAAATCTCTCAACCATATTGGATTTACAAATTTGTTTTTACGAG
66 AAATATATGTATTCAGCTAACCAAA-CTCTCAACCACATTGGATTTACAAATTTGTTTTTACAAG
* * * *
2854 TATCTGAATCTTGTTTCGATTTAATTAGAAATAAATGCAGAAAAAAATGGACATCGATATTAGAA
130 AATCTGAATCTTGTTTCGATTTAATTAGAAATAAATGCAGAAAAAAATGGAAAACGATATTACAA
* *
2919 GCGTGAAAAACATTAAAATTTTTTTGGCGTTGAATTATATGATTTTACTGAGTTTTGTGGCAAAA
195 GCGTGAAAAACATTAAAATTTTTTTGGCGTTGAATTATATGATTTTACTGAGTATTGTGGAAAAA
* * ** *
2984 AATTGGGCAAAAACTTTTTGGGTCAGTTTTTTGCAAAATTTTAGCTGAGATCGTGTACTAACCAT
260 AATTGGGCAAAAACTTTTCGGATCAGTTTTTTGCAAAATTTTAGCCAAAATCGTGTACT-A-CAT
* * * * * **
3049 CACAGTTTTTGGCTGAAAACGCTTTTCGGTGCTCTGACTCAGTTTTGCATGATTTTTGGAAGAAA
323 CACAGTTTGTGGCTAAAAACGCGTTTCGGTGCCCTGACTCAGTCTTGCATGATTTTCAGAAGAAA
* * * * *
3114 ACTCCTCGAAATATTTATATTCATCTAATCAAATCTTAGCCACAATGGATTTAAGGATTTATTTT
388 ACTCCTCGAAATATCTATATTCAGCTAACCAAATCTCACCCACAATGGATTTAAGGATTTATTTT
* * * * *
3179 TACCAGTATCTGAATCTTGTTTCGATTTAATTATAATTAAATTCATAAAAAATGGAAAATCGATA
453 TACCAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAATGGAAAAACGATA
*
3244 GAAGCGTGAAAAACCGTAAAATATTTTTGGCATTGAATTATATGATTTTTCTGAGTATTGTGGCA
518 GAAGCGTGAAAAACAGTAAAATATTTTTGGCATTGAATTATATGATTTTTCTGAGTATTGTGGCA
* * * *
3309 AAAAATTGGGAGAAATCTTTTCGGGTCAGTTTTTTGCAAAATTTTAGCCGAAATCGTGTACTAAC
583 AAAAATTGGGAGAAAACTTTTCAGATCAGTTTTTTGCAAAATTTTAGCCAAAATCGTGTACTAAC
* * * * * * **
3374 CATCACGGTTTTTGGCTGAAAACGCGTTTCGGTGCCCTGACTCCGTTTTGCATGATTTTTGGCAG
648 CATCACGATTTCTGGCTAAAAACGCGTTTCAGTGCCCTGACTCAGTCTTGCATGATTTTCAGCAG
* * * *
3439 AAAGACTCCTCGAAATATCTGTATTCATCTAACCAAATCTCTCAGCCATATTGGATTTACAGATT
713 AAAGACTCCTCGAAATATCTATATTCAGCTAACCAAA-CTCTCACCCACATTGGATTTACAGATT
3504 TGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCTA-AAAAAATGGAAA
777 TGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTC-AGAAAAAATGGAAA
3568 AACAATACCTCAGTATTG
841 AACAATACCTCAGTATTG
* *
3586 TGGCTAAAAACGCGTTTCGAGGCCCT-ACCTCAGTCTTGCATGATTTTACAG-AGAAAGGCTGCT
1 TGGCTAAAAACGCGTTTCGAGGCCCTGA-CTCAGTCTTGCATGATTTTAC-GCAGAAAGACTCCT
* * * ***
3649 TGAAATATCTGTATTCAGCTAACCAAA-TCTCACCCACATTGGATTTACGGGTTTGTTTTTACAA
64 CGAAATATATGTATTCAGCTAACCAAACTCTCAACCACATTGGATTTACAAATTTGTTTTTACAA
*
3713 GAATCTGAATCTT-TTTCGATTTAATTAGAAATAAATTCAGAAAAAAATGGAAAAACGATATTAC
129 GAATCTGAATCTTGTTTCGATTTAATTAGAAATAAATGCAGAAAAAAATGG-AAAACGATATTAC
* *
3777 AAGCGTGAAAAACATTAAAATTTTTTTTGCGTTGAATTATATGATTTTTCTGAGTATTGTGGAAA
193 AAGCGTGAAAAACATTAAAATTTTTTTGGCGTTGAATTATATGATTTTACTGAGTATTGTGGAAA
* *
3842 AAAATTGGGGAAAAACTTTTCGGATCAGTTTTTTGCAAAATTTTAGCCAAAATCGTGTACGT-TA
258 AAAATTGGGCAAAAACTTTTCGGATCAGTTTTTTGCAAAATTTTAGCCAAAATCGTGTAC-TACA
3906 TCAC-GATTTGTGGCTAAAAACGCGTTTCGAG-GCCCT-ACCTCAGTCTTGCATGATTTTACAG-
322 TCACAG-TTTGTGGCTAAAAACGCGTTTCG-GTGCCCTGA-CTCAGTCTTGCATGATTTT-CAGA
* * * * *
3967 AGAAAGGCTGCTTGAAATATCTATATTCAGCTAACCGAATCTCACCCACATTGGATTTACAGG-T
383 AGAAA-ACTCCTCGAAATATCTATATTCAGCTAACCAAATCTCACCCACAATGGATTTA-AGGAT
* *
4031 TTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAATGGAAA
446 TTATTTTTACCAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAATGGAAA
* * *
4096 AACGATATTAGAAGCGTGAAAAACATTAAAAT-TTTTTTGCGTTGAATTATATGATTTTTCTGAG
511 AACG--A-TAGAAGCGTGAAAAACAGTAAAATATTTTTGGCATTGAATTATATGATTTTTCTGAG
*
4160 TATTGTGGCAAAAAATTGGG-GAAAAACTTTTCAGATCAGTTTTTTGCAAAATTTTATCCAAAAT
573 TATTGTGGCAAAAAATTGGGAG-AAAACTTTTCAGATCAGTTTTTTGCAAAATTTTAGCCAAAAT
4224 CGTGTACTAACCATCACGATTTCTGGCTAAAAACGCGTTTCAAG-GCCCT-ACCTCAGTCTTGCA
637 CGTGTACTAACCATCACGATTTCTGGCTAAAAACGCGTTTC-AGTGCCCTGA-CTCAGTCTTGCA
* * *
4287 TGATTTTACAG-AGAAAGGCTGCTTGAAATATCTATATTCAGCTAACCAAA-TCTCACCCACATT
700 TGATTTT-CAGCAGAAAGACTCCTCGAAATATCTATATTCAGCTAACCAAACTCTCACCCACATT
* *
4350 GGATTTACGGGTTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAG
764 GGATTTACAGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAG
4415 AAAAAATGGAAAAAC
829 AAAAAATGGAAAAAC
4430 GATATTAGAA
Statistics
Matches: 744, Mismatches: 82, Indels: 39
0.86 0.09 0.05
Matches are distributed among these distances:
857 2 0.00
858 53 0.07
859 231 0.31
860 173 0.23
861 184 0.25
862 100 0.13
863 1 0.00
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.35
Consensus pattern (858 bp):
TGGCTAAAAACGCGTTTCGAGGCCCTGACTCAGTCTTGCATGATTTTACGCAGAAAGACTCCTCG
AAATATATGTATTCAGCTAACCAAACTCTCAACCACATTGGATTTACAAATTTGTTTTTACAAGA
ATCTGAATCTTGTTTCGATTTAATTAGAAATAAATGCAGAAAAAAATGGAAAACGATATTACAAG
CGTGAAAAACATTAAAATTTTTTTGGCGTTGAATTATATGATTTTACTGAGTATTGTGGAAAAAA
ATTGGGCAAAAACTTTTCGGATCAGTTTTTTGCAAAATTTTAGCCAAAATCGTGTACTACATCAC
AGTTTGTGGCTAAAAACGCGTTTCGGTGCCCTGACTCAGTCTTGCATGATTTTCAGAAGAAAACT
CCTCGAAATATCTATATTCAGCTAACCAAATCTCACCCACAATGGATTTAAGGATTTATTTTTAC
CAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAATGGAAAAACGATAGAA
GCGTGAAAAACAGTAAAATATTTTTGGCATTGAATTATATGATTTTTCTGAGTATTGTGGCAAAA
AATTGGGAGAAAACTTTTCAGATCAGTTTTTTGCAAAATTTTAGCCAAAATCGTGTACTAACCAT
CACGATTTCTGGCTAAAAACGCGTTTCAGTGCCCTGACTCAGTCTTGCATGATTTTCAGCAGAAA
GACTCCTCGAAATATCTATATTCAGCTAACCAAACTCTCACCCACATTGGATTTACAGATTTGTT
TTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAATGGAAAAACAA
TACCTCAGTATTG
Found at i:7533 original size:6 final size:6
Alignment explanation
Indices: 7524--7552 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
7514 AACAGAACAA
7524 GAAGAT GAAGAT GAAGAT GAAGAT GAAGA
1 GAAGAT GAAGAT GAAGAT GAAGAT GAAGA
7553 AGAATTTTCG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.34, T:0.14
Consensus pattern (6 bp):
GAAGAT
Found at i:7645 original size:54 final size:54
Alignment explanation
Indices: 7587--7751 Score: 190
Period size: 54 Copynumber: 3.0 Consensus size: 54
7577 ATTTTTAACA
* * * *
7587 GAGGAAGAAGAAGAATATTCACCTATTCGATCATC-TTTTCCGACAGAGGAAGAG
1 GAGGAAGAAGAAGAATATTCACCCATGCGATCATCATTTT-CAACAGAAGAAGAG
*
7641 GAGGAAGAAGAAGAATATTCACCCATGCGATCATCATTTTCAACAGAAGAAGAT
1 GAGGAAGAAGAAGAATATTCACCCATGCGATCATCATTTTCAACAGAAGAAGAG
* * * *
7695 GAGGAAGAAGAAGAAGGATTTTCGCCAACTG-AATCATCATTTTCAACAGAAGAAGAG
1 GAGGAAGAAGAAG-A--ATATTCACCCA-TGCGATCATCATTTTCAACAGAAGAAGAG
7752 AGCTCAGAAG
Statistics
Matches: 96, Mismatches: 10, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
54 57 0.59
55 5 0.05
57 32 0.33
58 2 0.02
ACGTcount: A:0.41, C:0.16, G:0.23, T:0.21
Consensus pattern (54 bp):
GAGGAAGAAGAAGAATATTCACCCATGCGATCATCATTTTCAACAGAAGAAGAG
Found at i:7699 original size:57 final size:57
Alignment explanation
Indices: 7587--7750 Score: 185
Period size: 57 Copynumber: 2.9 Consensus size: 57
7577 ATTTTTAACA
* * *
7587 GAGGAAGAAGAAGAATATTCACCTATTCGATCATC-TTTTC--C-GACAGAGGAAGAG
1 GAGGAAGAAGAAGAATATTCACCAATGCGATCATCATTTTCAACAGA-AGAAGAAGAG
* *
7641 GAGGAAGAAGAAGAATATTCACCCATGCGATCATCATTTTCAACAGAAGAAGATGAG
1 GAGGAAGAAGAAGAATATTCACCAATGCGATCATCATTTTCAACAGAAGAAGAAGAG
* * * * *
7698 GAAGAAGAAGAAGGATTTTCGCCAACTG-AATCATCATTTTCAACAGAAGAAGA
1 GAGGAAGAAGAAGAATATTCACCAA-TGCGATCATCATTTTCAACAGAAGAAGA
7751 GAGCTCAGAA
Statistics
Matches: 95, Mismatches: 10, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
54 33 0.35
55 5 0.05
57 53 0.56
58 4 0.04
ACGTcount: A:0.41, C:0.16, G:0.23, T:0.21
Consensus pattern (57 bp):
GAGGAAGAAGAAGAATATTCACCAATGCGATCATCATTTTCAACAGAAGAAGAAGAG
Found at i:33406 original size:21 final size:19
Alignment explanation
Indices: 33358--33416 Score: 73
Period size: 21 Copynumber: 3.0 Consensus size: 19
33348 CTATTTAGTA
*
33358 ACTGTATAGATGAGATTAT
1 ACTGTACAGATGAGATTAT
* *
33377 ACCGTACAGATTAGATTAGGT
1 ACTGTACAGATGAGATTA--T
33398 ACTGTACAGATGAGATTAT
1 ACTGTACAGATGAGATTAT
33417 TAGAACAACG
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
19 16 0.48
21 17 0.52
ACGTcount: A:0.36, C:0.10, G:0.22, T:0.32
Consensus pattern (19 bp):
ACTGTACAGATGAGATTAT
Found at i:57736 original size:28 final size:29
Alignment explanation
Indices: 57696--57757 Score: 117
Period size: 29 Copynumber: 2.2 Consensus size: 29
57686 ACCCCATTCT
57696 AAGCAAAAATAAGCTA-GGATTAGAAGTC
1 AAGCAAAAATAAGCTAGGGATTAGAAGTC
57724 AAGCAAAAATAAGCTAGGGATTAGAAGTC
1 AAGCAAAAATAAGCTAGGGATTAGAAGTC
57753 AAGCA
1 AAGCA
57758 GAGCAGTTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
28 16 0.48
29 17 0.52
ACGTcount: A:0.50, C:0.11, G:0.23, T:0.16
Consensus pattern (29 bp):
AAGCAAAAATAAGCTAGGGATTAGAAGTC
Found at i:58484 original size:380 final size:380
Alignment explanation
Indices: 57783--58533 Score: 1369
Period size: 380 Copynumber: 2.0 Consensus size: 380
57773 TTCCCACCAT
*
57783 TAAAACCAATATATTTCTTTGTGAAATAGGTGTTTATTCAAACCTAACTAATTATATATACAACA
1 TAAAACCAATATATTTCTTGGTGAAATAGGTGTTTATTCAAACCTAACTAATTATATATACAACA
* **
57848 AGTTAAATAAATATATAAAAGAACAATTCATTGGATGGCCCTACTTTTTGGTTATGCTTGTTGGA
66 AGTTAAATAAATATATAAAAGAACAATTCATTGGATGACCAAACTTTTTGGTTATGCTTGTTGGA
*
57913 ATAAGTAAGTACCAAGCAACAATCCCTAGCCTGAATTATCTATTCCAGGCTATCGGATTAAATTC
131 ATAAGTAAGTACCAAGCAACAATCCCTAGCCTGAATTATCTATTCCAGGCTATCAGATTAAATTC
*
57978 AATCAAAAATGAAGGATAAAGTTGAAAAAGTCATAAAAATATGAGTGAATGGAAATATGATTTCC
196 AATCAAAAATGAAGGATAAAGTTGAAAAAGTCATAAAAATATGAGTGAATGAAAATATGATTTCC
58043 ATTCATGATCTTCAAAGAGACATATCTAACCACTAGTAACAGTGTACTAAAGGATGAACAAAAAA
261 ATTCATGATCTTCAAAGAGACATATCTAACCACTAGTAACAGTGTACTAAAGGATGAACAAAAAA
*
58108 GGTTAATGAAGCAAATGCTCAAAACCAAGTGAAGAGAAAAGATTATCATAATTCA
326 GGTTAATGAAGCAAAGGCTCAAAACCAAGTGAAGAGAAAAGATTATCATAATTCA
58163 TAAAACCAATATATTTCTTGGTGAAATAGGTGTTTATTCAAACCTAACTAATTATATATACAACA
1 TAAAACCAATATATTTCTTGGTGAAATAGGTGTTTATTCAAACCTAACTAATTATATATACAACA
58228 AGTTAAATAAATATATAAAAGAACAATTCATTGGATGACCAAACTTTTTGGTTATGCTTGTTGGA
66 AGTTAAATAAATATATAAAAGAACAATTCATTGGATGACCAAACTTTTTGGTTATGCTTGTTGGA
* * *
58293 ATAAGTAAGTACCAAGCAACAGTCCCTAGCCTGAATTATCTATTTCAGGCTATCAGATTAAATTT
131 ATAAGTAAGTACCAAGCAACAATCCCTAGCCTGAATTATCTATTCCAGGCTATCAGATTAAATTC
* *
58358 AATCAAAAATGGAGGATAAAGTTGAAAACA-TCATAGAAATATGAGTGAATGAAAATATGATTTC
196 AATCAAAAATGAAGGATAAAGTTGAAAA-AGTCATAAAAATATGAGTGAATGAAAATATGATTTC
58422 CATTCATGATCTTCAAAGAGACATATCTAACCACTAGTAACAGTGTACTAAAGGATGAACAAAAA
260 CATTCATGATCTTCAAAGAGACATATCTAACCACTAGTAACAGTGTACTAAAGGATGAACAAAAA
*
58487 AGGTTAATGAAGCAAAGGCTCAAAACCAAGTGAAGAGAAATGATTAT
325 AGGTTAATGAAGCAAAGGCTCAAAACCAAGTGAAGAGAAAAGATTAT
58534 TGGTAAGGCA
Statistics
Matches: 357, Mismatches: 13, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
380 356 1.00
381 1 0.00
ACGTcount: A:0.42, C:0.14, G:0.15, T:0.29
Consensus pattern (380 bp):
TAAAACCAATATATTTCTTGGTGAAATAGGTGTTTATTCAAACCTAACTAATTATATATACAACA
AGTTAAATAAATATATAAAAGAACAATTCATTGGATGACCAAACTTTTTGGTTATGCTTGTTGGA
ATAAGTAAGTACCAAGCAACAATCCCTAGCCTGAATTATCTATTCCAGGCTATCAGATTAAATTC
AATCAAAAATGAAGGATAAAGTTGAAAAAGTCATAAAAATATGAGTGAATGAAAATATGATTTCC
ATTCATGATCTTCAAAGAGACATATCTAACCACTAGTAACAGTGTACTAAAGGATGAACAAAAAA
GGTTAATGAAGCAAAGGCTCAAAACCAAGTGAAGAGAAAAGATTATCATAATTCA
Done.