Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018187.1 Corchorus olitorius cultivar O-4 contig18220, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74548

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
473--539
34
2.0
34
90
0
107
14
22
2
59
1.49
41988--42044
21
2.9
19
72
10
60
35
21
5
38
1.76
43182--43236
17
3.2
17
86
0
74
36
18
21
23
1.95
44282--44337
29
1.9
29
96
0
103
44
30
3
21
1.69
44672--44799
57
2.3
55
81
6
159
14
18
12
53
1.72
47370--47421
27
1.9
27
100
0
104
46
3
21
28
1.69
49051--49083
2
16.5
2
100
0
66
51
0
0
48
1.00
50191--50233
20
2.2
20
86
0
59
39
4
2
53
1.34
50752--50788
19
1.9
19
88
0
56
35
21
0
43
1.53
50957--51043
22
4.0
22
77
10
88
32
5
21
40
1.77
50933--51219
65
4.3
65
73
14
171
36
8
19
36
1.81
51046--51307
22
11.8
22
71
9
147
38
9
17
35
1.82
51073--51126
27
2.0
27
92
0
90
48
5
12
33
1.65
51297--51340
22
2.0
22
82
4
54
45
4
13
36
1.64
51405--51488
22
3.8
22
79
3
80
36
4
21
36
1.75
51453--51497
22
2.0
22
95
0
81
33
4
15
46
1.66
51541--51632
44
2.1
44
81
2
105
40
7
15
36
1.76
51541--51632
22
4.2
22
70
2
69
40
7
15
36
1.76
51664--52054
22
17.8
21
67
14
146
37
9
15
38
1.79
51706--51876
66
2.6
66
80
7
179
40
8
14
36
1.75
52087--52138
22
2.5
21
87
9
72
42
5
7
44
1.57
56895--57056
6
30.3
6
67
30
102
14
14
53
17
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56886--57058
15
11.7
15
94
1
287
14
15
53
17
1.74
57888--57954
33
2.0
33
94
0
116
16
22
25
35
1.94
57966--58092
61
2.1
61
96
0
236
26
20
27
25
1.99
58361--58498
45
3.1
45
65
22
119
27
10
31
30
1.90
58326--58500
88
2.0
88
94
0
305
26
10
30
32
1.90
64971--65030
29
2.0
30
87
3
86
45
3
0
51
1.17
66184--69459
330
10.0
329
78
9
3199
32
14
16
36
1.89
66256--69459
649
4.9
651
84
5
3972
32
14
16
36
1.89
69521--73929
990
4.5
987
89
3
5939
33
15
16
35
1.89
73743--74128
205
1.9
206
84
3
517
26
20
16
36
1.94

Tables:   1

The End!