Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018188.1 Corchorus olitorius cultivar O-4 contig18221, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79703

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
79--1664
331
4.7
332
88
3
2277
33
14
16
35
1.89
18070--18094
1
25.0
1
100
0
50
100
0
0
0
0.00
23197--23231
3
12.0
3
93
6
63
34
0
0
65
0.93
23619--23646
3
9.3
3
100
0
56
32
0
0
67
0.91
23854--23961
55
2.0
55
98
0
207
29
14
16
38
1.89
33266--33305
18
2.2
18
95
0
71
27
10
27
35
1.89
44566--44599
15
2.2
16
89
5
52
52
14
26
5
1.64
57945--58027
22
3.8
21
73
17
64
57
1
2
38
1.19
57947--57995
25
2.0
25
84
8
64
59
0
0
40
0.98
60680--60705
6
4.3
6
100
0
52
50
0
15
34
1.45
63220--63244
2
12.5
2
100
0
50
48
0
0
52
1.00
66658--66696
3
13.0
3
100
0
78
33
0
0
66
0.92
70160--70225
32
2.1
32
94
0
114
31
21
12
34
1.90
75044--75111
20
3.6
21
72
24
78
57
20
0
22
1.41
75036--75113
36
2.2
36
100
0
156
55
23
0
21
1.44
75036--75125
36
2.6
34
91
6
121
55
22
0
22
1.44
77007--77047
3
14.0
3
84
5
57
60
4
0
34
1.18
77985--78023
2
20.5
2
89
10
64
48
0
0
51
1.00

Tables:   1

The End!