Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001819.1 Corchorus olitorius cultivar O-4 contig01819, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2233
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.32


Found at i:1298 original size:13 final size:13

Alignment explanation


    Indices: 1280--1310  Score: 62
    Period size: 13  Copynumber: 2.4  Consensus size: 13

       1270 TGTCATCACA

                         
       1280 ATGTTCATATAAC
          1 ATGTTCATATAAC

                         
       1293 ATGTTCATATAAC
          1 ATGTTCATATAAC

                 
       1306 ATGTT
          1 ATGTT

       1311 TCCAACTTTA


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   18  1.00

ACGTcount: A:0.35, C:0.13, G:0.10, T:0.42


Consensus pattern (13 bp):   
ATGTTCATATAAC
Done.