Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018196.1 Corchorus olitorius cultivar O-4 contig18229, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95723

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--903
154
5.9
154
84
3
1164
21
18
19
40
1.91
1--903
306
2.9
303
89
4
1321
21
18
19
40
1.91
6563--6593
15
2.0
16
93
6
55
38
3
25
32
1.72
11133--11182
25
2.0
26
84
4
66
22
12
16
50
1.77
11891--12020
45
2.9
45
90
2
190
23
4
30
41
1.75
12490--12539
25
2.0
26
84
4
66
22
12
16
50
1.77
13527--13557
10
3.2
10
90
9
55
90
0
9
0
0.46
13531--13556
9
2.9
9
100
0
52
92
0
7
0
0.39
17991--18041
17
3.0
17
85
0
66
23
27
39
9
1.86
21735--21940
72
2.9
72
92
1
342
19
29
18
31
1.96
22527--22558
16
2.0
16
93
0
55
31
31
21
15
1.95
22560--22640
29
2.8
29
73
3
74
38
18
18
24
1.93
22608--22700
45
2.1
45
85
4
125
35
22
20
21
1.96
22628--22700
16
4.8
16
67
16
55
35
26
19
19
1.95
28800--28866
25
2.8
25
88
6
104
59
19
5
14
1.56
32888--32919
14
2.2
15
94
5
57
84
0
12
3
0.74
32870--32912
22
2.0
22
86
4
61
74
0
16
9
1.06
45592--45653
30
2.1
30
100
0
124
22
35
19
22
1.96
49223--49302
40
2.0
40
92
0
133
41
5
18
35
1.73
55818--55874
15
3.7
15
90
2
87
14
8
12
64
1.48
64330--64368
20
2.1
19
90
9
62
43
35
5
15
1.69
64947--65145
25
8.0
24
94
5
335
33
29
17
20
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64943--65145
75
2.7
75
97
1
381
33
30
16
19
1.94
67100--67141
15
2.7
15
92
3
66
64
14
9
11
1.50
70411--70460
21
2.4
21
86
6
66
16
22
46
16
1.84
70654--70711
11
5.3
11
75
21
59
20
10
44
24
1.82
70649--70720
32
2.2
32
100
0
144
18
13
47
20
1.82
71115--71157
21
2.0
21
90
0
68
30
18
20
30
1.97
74715--74773
2
30.0
2
86
10
86
47
0
3
49
1.18
74689--74777
38
2.3
38
83
7
110
46
2
3
48
1.31
80882--81016
21
6.4
21
90
5
211
28
19
27
25
1.99
82879--82907
15
1.9
15
100
0
58
51
27
6
13
1.66
83504--83574
33
2.2
33
89
5
108
28
5
22
43
1.76
84057--84098
15
2.7
15
92
3
66
64
14
9
11
1.50
84858--84883
11
2.4
11
100
0
52
69
7
15
7
1.35
87410--87463
21
2.6
21
90
0
81
14
22
46
16
1.84
90595--90634
21
1.9
21
84
0
53
77
12
5
5
1.09
90607--90640
15
2.3
14
90
10
50
79
8
2
8
1.03
90984--91022
15
2.5
15
91
4
60
64
12
10
12
1.51
91785--91810
11
2.4
11
100
0
52
69
7
15
7
1.35
94204--94338
21
6.4
21
94
1
227
27
19
28
25
1.99

Tables:   1

The End!