Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018198.1 Corchorus olitorius cultivar O-4 contig18231, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2928
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31


Found at i:755 original size:26 final size:23

Alignment explanation


    Indices: 725--771  Score: 67
    Period size: 26  Copynumber: 1.9  Consensus size: 23

        715 CTTGAAAATT

                                      
        725 TGAAAAACTTTGATGGATGAGATGGA
          1 TGAAAAAC-TTGAT-GAT-AGATGGA

                                 
        751 TGAAAAACTTGATGATAGATG
          1 TGAAAAACTTGATGATAGATG

        772 AATAGAAGGA


Statistics
Matches: 21,  Mismatches: 0, Indels: 3
        0.88            0.00        0.12

Matches are distributed among these distances:
  23    5  0.24
  24    3  0.14
  25    5  0.24
  26    8  0.38

ACGTcount: A:0.40, C:0.04, G:0.28, T:0.28


Consensus pattern (23 bp):   
TGAAAAACTTGATGATAGATGGA
Done.