Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018201.1 Corchorus olitorius cultivar O-4 contig18234, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3205
ACGTcount: A:0.31, C:0.14, G:0.18, T:0.36


Found at i:2109 original size:8 final size:8

Alignment explanation


    Indices: 2096--2120  Score: 50
    Period size: 8  Copynumber: 3.1  Consensus size: 8

       2086 ATTTCAAGAG

                    
       2096 GAAGAATT
          1 GAAGAATT

                    
       2104 GAAGAATT
          1 GAAGAATT

                    
       2112 GAAGAATT
          1 GAAGAATT

             
       2120 G
          1 G

       2121 GAGCTTTAAT


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   8   17  1.00

ACGTcount: A:0.48, C:0.00, G:0.28, T:0.24


Consensus pattern (8 bp):   
GAAGAATT
Done.