genome.fa.s18210.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018210.1 Corchorus olitorius cultivar O-4 contig18243, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82051

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37093--37163	21	3.4	21	94	3	117	28	18	26	26	1.98
41473--41497	10	2.5	10	100	0	50	32	40	0	28	1.57
42311--42344	16	2.2	16	89	5	52	17	5	14	61	1.52
47020--47057	18	2.1	19	90	5	60	28	13	39	18	1.88
50772--50809	18	2.1	18	90	0	58	39	21	36	2	1.67
52443--52509	21	3.2	21	64	16	57	50	14	5	28	1.66
52430--52510	42	1.9	42	97	0	153	46	16	7	29	1.73
53084--53411	174	1.9	166	84	7	426	37	15	16	30	1.90
54245--54301	2	28.5	2	100	0	114	0	49	0	50	1.00
54301--54334	2	17.0	2	100	0	68	50	0	0	50	1.00
55278--55302	13	1.9	13	100	0	50	52	0	0	48	1.00
55883--55918	5	7.6	5	87	12	58	58	0	0	41	0.98
55884--55922	13	3.2	13	79	20	57	56	0	0	43	0.99
57481--57599	57	2.1	57	93	0	202	47	0	14	37	1.44
57479--57573	29	3.3	29	70	2	84	48	0	12	38	1.41
60251--60280	6	5.0	6	91	0	51	30	50	20	0	1.49
60251--60289	12	3.2	12	92	0	60	28	51	20	0	1.48
60255--60289	18	1.9	18	88	0	52	28	51	20	0	1.47
61295--61321	13	2.1	13	100	0	54	48	14	14	22	1.81
62839--62947	45	2.4	45	76	4	112	42	18	14	24	1.88
65942--66224	95	2.9	97	86	4	394	35	10	14	38	1.81
66413--66601	99	1.9	99	97	0	360	34	11	17	35	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70861--70898	18	2.1	19	90	5	60	28	13	39	18	1.88
74722--74746	2	12.5	2	100	0	50	52	0	0	48	1.00
75975--76013	11	3.2	12	82	13	53	7	7	10	74	1.22
77800--77892	47	2.0	46	91	2	150	56	11	16	15	1.66
78361--78940	39	15.0	38	70	15	273	37	18	20	23	1.94
78367--78956	116	5.1	117	73	9	413	37	18	20	23	1.94

Tables:   1

The End!