Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018219.1 Corchorus olitorius cultivar O-4 contig18252, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53981

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
241--460
4
55.5
4
65
12
62
25
10
0
62
1.33
235--298
27
2.4
27
84
7
78
28
4
0
67
1.11
265--303
19
2.1
18
85
4
51
30
7
0
61
1.24
243--364
46
2.6
46
89
1
181
27
9
1
62
1.35
398--470
20
3.6
19
82
14
92
21
8
0
69
1.14
11348--11573
38
5.9
38
93
1
337
29
16
23
29
1.97
24423--24537
55
2.0
57
90
5
180
33
23
1
40
1.65
24625--24691
21
3.2
21
64
16
57
32
7
11
47
1.68
24604--24725
42
2.9
42
96
1
219
30
8
14
46
1.74
33880--34013
61
2.2
63
87
5
193
29
26
8
35
1.87
37262--37335
40
2.0
37
87
12
107
32
13
9
44
1.76
39181--39212
16
2.0
16
93
0
55
46
12
3
37
1.57
41404--41474
3
24.0
3
94
2
126
33
1
0
64
1.02
42196--42226
2
15.5
2
100
0
62
48
0
0
51
1.00
44368--44397
13
2.2
14
94
5
53
60
0
0
40
0.97
46057--46120
29
2.2
29
88
0
92
34
25
7
32
1.84
47347--47375
15
1.9
15
100
0
58
20
13
24
41
1.89
47519--47569
24
2.1
24
85
7
68
50
0
7
41
1.31
52898--52960
21
3.0
21
95
0
117
19
17
38
25
1.93
52826--53032
92
2.2
92
89
0
315
19
22
28
30
1.98
52993--53032
21
1.9
21
94
0
71
15
22
37
25
1.93

Tables:   1

The End!