Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018220.1 Corchorus olitorius cultivar O-4 contig18253, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24081

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2603--2643
21
2.0
21
90
9
66
31
24
9
34
1.88
3753--3794
21
2.0
21
90
0
66
21
16
35
26
1.94
3681--3865
71
2.6
71
87
0
271
20
21
27
31
1.97
3827--3866
21
1.9
21
94
0
71
15
22
37
25
1.93
4029--4068
21
1.9
21
84
0
53
25
17
20
37
1.94
4864--4906
6
7.2
6
97
0
68
44
32
0
23
1.54
5434--5470
2
18.5
2
88
0
56
48
5
0
45
1.25
5437--5470
12
2.8
12
100
0
68
50
5
0
44
1.26
5493--5531
17
2.2
18
90
4
62
46
30
2
20
1.64
7120--7154
18
1.9
18
94
0
61
31
20
22
25
1.98
7956--8040
29
2.7
30
83
8
100
44
2
31
21
1.65
9433--9760
162
2.0
161
91
1
541
28
20
24
27
1.99
9722--9931
59
3.6
59
98
0
393
26
20
24
29
1.99
9936--10334
133
3.0
133
90
0
618
27
20
22
29
1.99
10531--10576
18
2.5
19
75
10
51
30
4
30
34
1.77
13489--13533
2
22.5
2
86
8
65
46
2
2
48
1.26
14459--14539
42
1.9
42
92
0
135
46
16
7
29
1.73
14605--14718
56
2.0
56
89
3
176
40
2
23
33
1.69
15510--15597
37
2.4
38
87
7
121
37
18
17
27
1.92
16391--16438
4
12.8
4
86
8
66
81
0
18
0
0.70
17749--17779
1
31.0
1
100
0
62
0
0
0
100
0.00
19039--19192
77
2.0
78
86
6
215
38
27
22
11
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19593--19664
32
2.5
27
80
20
83
40
15
25
19
1.90
19605--19687
32
2.6
32
94
1
141
36
18
25
20
1.95
19736--19785
17
2.8
18
81
6
66
80
2
2
16
0.91
19788--19906
33
3.7
32
79
9
107
36
14
26
22
1.92
19973--20405
39
11.1
39
95
2
771
32
18
17
31
1.94

Tables:   1

The End!