Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018225.1 Corchorus olitorius cultivar O-4 contig18258, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  133783

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1099--1143
19
2.5
18
86
13
58
55
2
0
42
1.12
1482--1539
28
2.1
28
93
0
98
20
20
10
48
1.79
5869--5918
25
2.0
25
88
7
75
8
22
34
36
1.83
5894--5951
16
3.6
16
77
9
73
10
15
36
37
1.82
5964--6008
6
7.7
6
90
5
65
2
20
46
31
1.62
5941--6007
29
2.3
29
86
0
89
5
19
43
31
1.75
5941--6002
23
2.7
23
82
9
65
4
19
45
30
1.71
5965--6008
17
2.5
18
85
7
63
2
20
47
29
1.62
8441--8481
16
2.6
16
96
0
73
39
12
7
41
1.70
9839--9984
76
1.9
74
94
2
256
39
4
15
40
1.67
10817--10872
26
2.2
26
83
6
69
19
14
12
53
1.72
10970--11115
78
1.9
76
86
5
206
52
10
3
32
1.53
14098--14133
3
12.0
3
100
0
72
33
0
0
66
0.92
16192--16245
21
2.6
21
75
13
58
18
7
5
68
1.33
17018--17063
17
2.7
17
86
0
65
30
19
26
23
1.98
20780--20844
29
2.2
30
83
2
78
27
12
18
41
1.86
37120--37268
71
2.1
71
91
1
235
33
19
11
35
1.88
39342--39388
16
2.7
18
80
12
62
40
2
6
51
1.39
41234--41263
3
10.0
3
100
0
60
66
0
33
0
0.92
42657--42681
6
4.2
6
100
0
50
0
52
16
32
1.44
46501--46534
13
2.6
13
100
0
68
52
8
5
32
1.56
47647--47708
31
2.0
31
93
0
106
41
6
17
33
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49191--49220
14
2.1
15
93
6
53
13
3
6
76
1.11
50230--50264
2
18.0
2
94
5
63
48
0
0
51
1.00
52477--52514
2
19.0
2
100
0
76
50
0
0
50
1.00
58780--58812
6
5.5
6
92
0
57
0
0
15
84
0.61
60956--60992
2
18.5
2
100
0
74
48
0
0
51
1.00
62869--62908
13
2.8
15
85
14
66
45
22
0
32
1.53
62875--62914
13
3.1
13
100
0
80
45
22
0
32
1.53
64825--64853
2
15.0
2
92
7
51
48
0
0
51
1.00
64842--64935
47
2.0
47
100
0
188
34
6
31
27
1.82
66790--66824
16
2.2
16
90
10
54
60
11
8
20
1.57
69508--69579
36
2.0
36
94
0
126
37
8
11
43
1.71
70289--70337
25
2.0
25
100
0
98
14
32
20
32
1.92
70651--70675
7
3.6
7
100
0
50
32
28
0
40
1.57
74609--74647
15
2.5
16
88
12
55
71
0
28
0
0.86
75538--75593
21
2.7
21
88
0
94
39
3
16
41
1.65
81113--81157
1
45.0
1
90
0
72
2
0
2
95
0.31
81573--81707
41
3.3
39
73
7
117
20
14
17
48
1.82
82246--82295
17
2.9
17
80
16
59
80
0
16
4
0.87
83122--83154
17
1.9
17
93
0
57
45
21
12
21
1.84
83545--83578
16
2.1
17
88
5
52
52
17
5
23
1.66
86379--86408
13
2.3
13
94
0
51
10
20
20
50
1.76
101256--101299
21
2.1
21
83
8
54
43
29
6
20
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107146--107189
23
1.9
23
90
0
70
27
22
20
29
1.99
113572--113762
50
3.8
49
82
2
238
31
18
15
34
1.92
113581--113762
100
1.8
100
86
4
269
31
18
15
34
1.92
114592--115254
69
9.6
69
90
2
1001
27
30
16
26
1.97
133108--133136
14
2.0
15
93
6
51
68
6
6
17
1.34

Tables:   1

The End!