Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018226.1 Corchorus olitorius cultivar O-4 contig18259, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91528

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4099--4145
26
1.9
24
87
12
69
42
4
25
27
1.73
18336--18400
21
3.1
21
75
16
71
21
41
30
6
1.77
19880--19939
30
2.0
29
81
9
68
21
11
5
61
1.49
20128--20161
17
2.0
17
88
0
50
35
5
32
26
1.81
33693--33742
21
2.4
21
90
6
75
22
42
32
4
1.72
46518--46552
18
1.9
18
88
0
52
45
5
11
37
1.64
51991--52040
21
2.5
20
81
12
57
30
30
0
40
1.57
52116--52147
16
1.9
17
93
6
57
34
9
6
50
1.60
54402--54476
16
4.7
16
73
6
71
41
38
12
8
1.72
71478--71546
30
2.3
30
97
0
129
44
27
15
11
1.81
73558--73633
29
2.6
28
76
17
73
32
9
27
30
1.88
73839--74297
153
3.0
151
91
4
757
53
3
8
34
1.50
75030--75633
148
4.0
150
90
3
950
35
8
3
51
1.50
76081--76170
46
2.0
45
91
6
148
37
17
5
38
1.74
81705--81775
35
2.0
36
97
2
135
39
18
8
33
1.81
85125--85197
12
5.9
12
82
4
92
28
21
12
36
1.90
85125--85205
25
3.3
25
89
1
119
29
19
12
38
1.89
85125--85205
37
2.2
37
78
8
58
29
19
12
38
1.89
89980--90056
40
1.9
40
100
0
154
36
37
15
10
1.82

Tables:   1

The End!