Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001824.1 Corchorus olitorius cultivar O-4 contig01824, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 913

Length: 1522
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.33


Found at i:1050 original size:33 final size:32

Alignment explanation


    Indices: 947--1052  Score: 149
    Period size: 33  Copynumber: 3.2  Consensus size: 32

        937 CGGCGGGCAT

                                            
        947 GTCGCGATCCGGTCGCGACTAGCCCACGGGAA
          1 GTCGCGATCCGGTCGCGACTAGCCCACGGGAA

             *        *                       
        979 TATCGCGATCTGGTCGCGACTAGCCCACGGGCAA
          1 -GTCGCGATCCGGTCGCGACTAGCCCACGGG-AA

                                 *          *
       1013 GTCGCGATCCGGTCGCGACTATCCCACGGGAGG
          1 GTCGCGATCCGGTCGCGACTAGCCCACGGGA-A

                   
       1046 GTCGCGA
          1 GTCGCGA

       1053 CTAGCCTTGG


Statistics
Matches: 65,  Mismatches: 6, Indels: 4
        0.87            0.08        0.05

Matches are distributed among these distances:
  32    1  0.02
  33   62  0.95
  34    2  0.03

ACGTcount: A:0.18, C:0.33, G:0.34, T:0.15


Consensus pattern (32 bp):   
GTCGCGATCCGGTCGCGACTAGCCCACGGGAA
Done.