Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018241.1 Corchorus olitorius cultivar O-4 contig18274, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36436

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1308--1390
42
2.0
42
92
0
139
28
8
15
46
1.75
8527--8557
16
1.9
16
93
0
53
32
32
0
35
1.58
11353--11380
6
4.7
6
100
0
56
14
14
0
71
1.15
11917--11955
13
3.0
13
84
0
51
41
15
17
25
1.89
11947--11977
11
2.8
11
90
0
53
32
9
22
35
1.87
15358--15438
32
2.5
32
97
0
153
38
6
6
49
1.53
22816--22939
33
4.0
29
80
15
117
30
16
15
37
1.90
23722--23776
20
2.9
19
73
21
53
25
20
16
38
1.92
23784--23809
10
2.6
10
100
0
52
38
23
7
30
1.83
24463--24537
39
1.9
38
91
2
123
29
8
5
57
1.50
28455--28521
17
4.2
17
70
18
63
55
1
0
43
1.09
30494--30527
16
2.1
16
94
0
59
41
11
14
32
1.82
35603--35646
2
22.5
2
90
4
72
47
2
0
50
1.13

Tables:   1

The End!