Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018244.1 Corchorus olitorius cultivar O-4 contig18277, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30744

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4421--4461
22
1.9
22
90
5
66
43
4
19
31
1.72
8050--8078
11
2.5
12
94
5
51
89
0
10
0
0.48
8050--8079
14
2.2
13
94
5
51
90
0
10
0
0.47
12086--12119
12
2.8
12
91
8
52
44
2
0
52
1.16
13741--13795
29
1.9
29
85
3
76
32
5
9
52
1.56
13904--13959
27
2.1
26
93
3
94
19
12
42
25
1.86
13910--13968
27
2.2
27
88
8
86
20
13
44
22
1.86
16027--16067
10
4.1
10
83
0
55
17
0
21
60
1.35
19898--20012
57
2.0
56
94
1
203
35
22
0
40
1.60
20079--20143
21
3.1
21
62
16
53
29
6
15
49
1.68
20078--20158
42
1.9
42
94
0
144
29
7
17
45
1.75
20525--20794
150
1.8
150
98
0
522
35
17
12
34
1.87
23658--23715
20
2.8
20
79
7
71
51
13
13
20
1.75
23763--23843
22
3.8
21
80
4
90
38
9
11
40
1.74
23945--23970
13
2.0
13
100
0
52
61
0
0
38
0.96
24313--24695
178
2.1
178
81
3
448
37
15
13
33
1.87
25715--25765
22
2.2
24
83
16
72
41
0
0
58
0.98
25715--25763
25
2.0
25
84
8
64
40
0
0
59
0.98
27068--27110
21
2.2
21
84
12
56
51
9
18
20
1.74
27196--27246
16
3.1
17
68
21
54
31
3
27
37
1.75

Tables:   1

The End!