Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018245.1 Corchorus olitorius cultivar O-4 contig18278, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3876
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31


Found at i:2992 original size:15 final size:16

Alignment explanation


    Indices: 2972--3001  Score: 53
    Period size: 15  Copynumber: 1.9  Consensus size: 16

       2962 ATTCATATCT

                            
       2972 GCAAAAAC-AGAACCA
          1 GCAAAAACAAGAACCA

                           
       2987 GCAAAAACAAGAACC
          1 GCAAAAACAAGAACC

       3002 CATATCTGCA


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15    8  0.57
  16    6  0.43

ACGTcount: A:0.60, C:0.27, G:0.13, T:0.00


Consensus pattern (16 bp):   
GCAAAAACAAGAACCA

Done.