Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018248.1 Corchorus olitorius cultivar O-4 contig18281, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 912

Length: 1520
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37


Found at i:1132 original size:14 final size:14

Alignment explanation


    Indices: 1084--1131  Score: 73
    Period size: 14  Copynumber: 3.5  Consensus size: 14

       1074 CAAAACCTTT

                          
       1084 TTGAAAATCATTTC
          1 TTGAAAATCATTTC

                           
       1098 TTGAAAA-CAATTTC
          1 TTGAAAATC-ATTTC

                          
       1112 TTGAAAATCATTT-
          1 TTGAAAATCATTTC

                   
       1125 TTGAAAA
          1 TTGAAAA

       1132 ACGTCCTTTA


Statistics
Matches: 32,  Mismatches: 0, Indels: 5
        0.86            0.00        0.14

Matches are distributed among these distances:
  13    8  0.25
  14   23  0.72
  15    1  0.03

ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40


Consensus pattern (14 bp):   
TTGAAAATCATTTC

Found at i:1202 original size:5 final size:5

Alignment explanation


    Indices: 1190--1225  Score: 51
    Period size: 5  Copynumber: 7.8  Consensus size: 5

       1180 TGCAATCCAA

                                                          
       1190 TTTT- TTTTC TTTTC TTTTC TTTTC TTTT- TTTT- TTTT
          1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTT

       1226 GCAACTTTTC


Statistics
Matches: 31,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
   4   12  0.39
   5   19  0.61

ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89


Consensus pattern (5 bp):   
TTTTC
Done.