Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001825.1 Corchorus olitorius cultivar O-4 contig01825, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 816

Length: 1360
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32


Found at i:533 original size:2 final size:2

Alignment explanation


    Indices: 528--558  Score: 55
    Period size: 2  Copynumber: 16.0  Consensus size: 2

        518 TATGTGTGTG

                                                           
        528 TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

        559 GGAATTTGGT


Statistics
Matches: 28,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
   1    1  0.04
   2   27  0.96

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (2 bp):   
TA

Found at i:727 original size:21 final size:21

Alignment explanation


    Indices: 701--743  Score: 86
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        691 TCTCAAAACG

                                 
        701 GAATCTATTCCAAACATATAT
          1 GAATCTATTCCAAACATATAT

                                 
        722 GAATCTATTCCAAACATATAT
          1 GAATCTATTCCAAACATATAT

             
        743 G
          1 G

        744 CCATGGTTCC


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.42, C:0.19, G:0.07, T:0.33


Consensus pattern (21 bp):   
GAATCTATTCCAAACATATAT
Done.