Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018252.1 Corchorus olitorius cultivar O-4 contig18285, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86057

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12592--12655
2
31.5
2
78
12
51
43
1
4
50
1.32
12594--12679
41
2.0
42
93
4
147
41
2
8
47
1.46
17910--17937
14
2.0
14
100
0
56
35
14
7
42
1.73
18369--18419
19
2.7
19
85
8
61
31
1
0
66
1.03
19420--19453
9
3.8
9
96
0
59
67
8
23
0
1.18
19460--19500
21
2.0
21
100
0
82
31
34
4
29
1.79
25365--25400
1
36.0
1
100
0
72
100
0
0
0
0.00
33200--33254
7
8.0
7
91
4
94
41
0
16
41
1.48
45786--45824
18
2.2
18
100
0
78
30
0
15
53
1.42
46579--46627
3
16.7
3
91
4
82
30
2
0
67
1.02
48589--48678
45
2.1
43
87
10
130
37
21
4
36
1.73
50837--50907
32
2.2
32
87
2
99
57
1
2
38
1.22
50837--50916
32
2.5
31
85
2
97
53
1
3
41
1.27
50883--51218
167
2.0
166
90
5
525
46
5
9
37
1.62
51089--51272
92
2.0
92
90
2
289
49
7
8
34
1.61
51948--51983
17
2.1
18
94
5
65
58
5
0
36
1.22
52308--52467
59
2.7
60
89
3
243
28
16
17
37
1.91
58911--59067
78
2.0
78
88
2
235
22
42
21
12
1.87
66736--66911
87
2.0
87
89
4
266
40
10
3
46
1.55
66781--67223
221
2.0
220
95
0
805
37
14
9
38
1.79
69692--69811
22
5.5
22
70
13
79
35
10
15
39
1.82
73395--73478
22
3.9
22
78
7
82
41
7
16
34
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
73478--73552
22
3.4
21
83
7
96
44
9
8
38
1.66
74797--75052
124
2.0
128
88
6
387
36
11
1
50
1.50
76684--76739
28
2.0
28
96
0
103
19
7
19
53
1.68

Tables:   1

The End!