Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018253.1 Corchorus olitorius cultivar O-4 contig18286, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  121490

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
550--656
2
53.5
2
96
0
196
0
0
49
49
1.07
4040--4907
319
2.7
318
81
7
952
36
15
13
34
1.86
4898--4929
2
16.0
2
100
0
64
50
0
0
50
1.00
8344--8398
17
3.2
17
86
0
74
34
16
23
25
1.95
12621--12661
20
2.1
19
86
4
55
60
7
9
21
1.52
12745--12786
3
15.0
3
80
14
54
64
0
0
35
0.94
12745--12786
11
3.8
12
81
15
54
64
0
0
35
0.94
12745--12777
14
2.4
14
94
0
57
66
0
0
33
0.92
21189--21335
73
2.0
73
98
0
285
18
9
17
55
1.68
26134--26178
19
2.4
19
96
0
81
33
15
17
33
1.92
32212--32250
6
7.0
6
91
8
57
17
0
10
71
1.12
41024--41053
6
5.0
6
95
0
51
16
3
0
80
0.85
41200--41252
26
2.0
26
100
0
106
41
7
3
47
1.50
41281--41319
2
19.5
2
89
0
60
43
0
5
51
1.24
41866--41911
23
2.0
24
91
4
76
45
0
23
30
1.53
42039--42074
17
2.1
17
94
0
63
47
16
11
25
1.79
43460--43499
18
2.2
18
100
0
80
62
22
0
15
1.32
43856--43920
30
2.2
30
86
5
87
26
7
29
36
1.84
44700--44736
2
18.5
2
100
0
74
51
0
0
48
1.00
45527--45564
18
2.1
19
95
5
69
47
15
10
26
1.78
48011--48035
3
8.3
3
100
0
50
64
0
0
36
0.94
53872--53930
30
2.0
30
89
0
91
22
10
25
42
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60777--60972
72
2.7
72
97
0
365
41
15
11
31
1.83
71659--71737
24
3.3
24
87
3
106
51
18
11
17
1.75
89785--89872
42
2.1
42
97
0
167
4
18
18
59
1.55
92669--92695
13
2.1
13
100
0
54
40
14
14
29
1.86
101156--101192
19
2.0
19
89
5
58
35
0
0
64
0.94
111702--111737
18
2.0
18
100
0
72
27
27
22
22
1.99
120284--120344
25
2.4
25
91
0
104
9
45
37
6
1.63
120567--120601
14
2.5
14
95
0
61
37
22
0
40
1.55

Tables:   1

The End!