Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018255.1 Corchorus olitorius cultivar O-4 contig18288, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30655

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2194--2299
20
6.1
17
68
24
51
17
30
1
50
1.57
2207--2306
50
2.0
50
100
0
200
18
34
2
46
1.60
2742--2870
64
2.0
64
90
0
204
43
20
17
17
1.88
2841--2931
45
2.0
45
93
0
155
41
20
21
15
1.89
3357--3395
12
3.2
12
100
0
78
41
33
0
25
1.56
4321--4481
56
3.0
53
92
7
272
45
9
16
28
1.78
8719--8897
93
1.9
93
91
0
295
49
2
12
34
1.56
8939--9002
31
2.0
32
87
3
94
43
9
18
28
1.81
9549--9586
17
2.2
18
85
4
51
50
0
2
47
1.15
11848--11927
40
2.0
40
92
0
133
37
15
5
42
1.68
19672--19696
12
2.1
12
100
0
50
32
0
36
32
1.58
23968--24017
26
1.9
26
95
0
91
46
14
10
30
1.77
29882--29921
19
2.1
19
100
0
80
42
0
17
40
1.49

Tables:   1

The End!