Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018257.1 Corchorus olitorius cultivar O-4 contig18290, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29708

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1527--1947
100
4.2
100
96
0
743
28
24
23
23
2.00
1923--1971
24
2.0
24
100
0
98
30
16
20
32
1.94
8481--8526
22
2.1
22
100
0
92
34
4
21
39
1.73
9112--9331
108
2.0
109
91
4
354
41
22
16
19
1.90
12925--12963
20
2.0
20
94
0
69
38
0
5
56
1.22
13430--13466
16
2.3
16
95
0
65
8
37
0
54
1.30
16479--16720
129
1.9
129
86
6
348
38
10
0
50
1.42
17000--17163
79
2.1
78
92
4
271
52
6
6
34
1.54
17088--17207
59
2.0
62
90
4
192
49
7
9
34
1.63
17271--17415
63
2.2
64
93
3
247
27
13
29
28
1.94
20353--20442
45
2.0
45
100
0
180
46
11
11
31
1.74
26130--26166
17
2.2
17
100
0
74
21
0
27
51
1.48

Tables:   1

The End!