Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018258.1 Corchorus olitorius cultivar O-4 contig18291, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45636

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1625--1655
16
1.9
16
93
0
53
6
3
9
80
0.99
1617--1665
22
2.2
23
85
3
64
4
6
16
73
1.19
3076--3108
10
2.9
12
82
17
52
51
0
6
42
1.26
11576--11691
22
5.3
21
75
8
79
34
19
7
37
1.81
11622--11693
21
3.3
21
86
5
72
34
19
5
40
1.75
12281--12332
2
27.0
2
81
14
65
50
0
1
48
1.12
12280--12333
27
2.0
28
92
3
92
50
0
1
48
1.11
13020--13072
18
2.9
19
77
11
65
41
11
5
41
1.64
14042--14070
2
14.5
2
100
0
58
48
0
0
51
1.00
16366--16390
11
2.3
11
100
0
50
36
16
0
48
1.46
16603--16683
39
2.0
40
92
2
137
50
8
3
37
1.51
16794--17202
201
2.0
200
95
1
737
36
11
8
44
1.70
27637--27726
45
2.0
45
97
0
171
30
22
13
34
1.92
38771--38864
48
2.0
45
89
6
143
25
15
41
17
1.89

Tables:   1

The End!