Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018262.1 Corchorus olitorius cultivar O-4 contig18295, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42013

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3145--3268
33
4.0
29
80
15
117
30
16
15
37
1.90
5192--5257
27
2.4
27
85
7
89
46
1
7
43
1.41
5381--5413
2
17.0
2
87
6
50
51
0
3
45
1.16
6215--6253
14
2.9
13
80
3
51
53
2
2
41
1.28
6239--6492
122
2.0
128
90
6
403
50
1
10
37
1.49
7966--8007
16
2.6
16
71
14
50
42
2
21
33
1.66
13313--13341
2
14.5
2
100
0
58
51
0
0
48
1.00
13406--13452
19
2.5
18
82
6
58
21
14
4
59
1.52
13457--13556
52
1.9
52
95
0
182
32
14
19
35
1.91
22660--22708
23
2.2
23
88
3
73
57
16
4
22
1.56
29225--29304
22
3.6
22
76
15
85
26
15
15
43
1.85
29787--29846
21
2.8
22
89
5
95
28
15
15
41
1.86
29887--30136
22
11.3
22
78
8
134
32
18
14
34
1.91
29909--30126
89
2.5
88
78
7
221
32
18
13
35
1.90
29929--30159
111
2.1
111
80
6
254
33
17
12
36
1.87
30017--30186
44
3.8
45
80
8
141
32
17
13
37
1.88
30085--30196
22
5.0
22
76
8
91
31
20
11
36
1.88
30017--30167
22
6.8
22
69
11
83
32
15
13
37
1.88
30147--30262
56
2.0
59
85
5
157
31
18
9
40
1.82
30254--30307
26
2.1
26
89
0
81
37
11
20
31
1.88
30286--30348
22
2.9
22
72
13
58
30
15
14
39
1.87
30480--30519
21
1.9
21
90
10
64
35
10
5
50
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41894--41933
2
20.0
2
84
0
53
57
0
0
42
0.98

Tables:   1

The End!