Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018264.1 Corchorus olitorius cultivar O-4 contig18297, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77394

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14211--14887
348
1.9
348
89
1
1043
22
28
13
35
1.92
17030--17065
18
2.0
18
88
0
54
36
16
8
38
1.79
19480--19598
3
39.7
3
94
0
211
30
33
0
36
1.58
21170--21212
21
2.0
21
95
0
77
55
18
11
13
1.68
21961--22005
19
2.4
19
85
7
56
2
17
0
80
0.82
34697--34750
25
2.2
24
86
3
72
37
9
5
48
1.59
35778--35829
25
2.1
25
89
7
79
51
0
1
46
1.12
40693--40722
15
2.0
15
93
0
51
23
26
16
33
1.96
41142--41237
6
16.0
6
86
0
93
22
21
26
29
1.99
42944--43081
69
2.0
69
100
0
276
24
15
18
40
1.90
47540--47583
23
1.9
23
100
0
88
50
15
6
27
1.70
54376--54417
18
2.3
18
95
4
75
26
16
26
30
1.97
59377--59417
22
1.9
22
85
14
59
26
4
14
53
1.61
66937--67025
31
2.9
30
81
8
108
17
20
24
37
1.94
76353--76387
18
1.9
18
88
0
52
0
17
0
82
0.66
76347--76385
17
2.3
17
81
0
51
0
15
2
82
0.79
76894--76974
39
2.0
40
92
2
137
50
8
3
37
1.51
76965--77010
24
2.0
23
91
4
74
32
6
6
54
1.52

Tables:   1

The End!