Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018265.1 Corchorus olitorius cultivar O-4 contig18298, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65162

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
535--604
36
1.9
36
91
0
113
60
8
10
21
1.55
3472--3510
2
19.0
2
94
5
69
48
2
0
48
1.15
8200--8258
19
3.0
19
78
9
73
33
22
6
37
1.80
13798--14302
250
2.0
250
99
0
992
29
19
17
34
1.94
22517--22567
26
2.0
26
96
0
93
43
3
11
41
1.60
32468--32533
20
3.4
20
89
8
109
37
3
25
33
1.72
32713--32923
116
1.8
116
94
0
377
33
14
6
45
1.71
32900--33141
133
1.8
132
85
4
344
37
10
1
50
1.46
33234--33345
52
2.2
52
86
0
152
29
18
15
36
1.92
37004--37084
39
2.0
40
92
2
137
50
8
3
37
1.51
37195--37605
201
2.0
204
94
2
731
36
10
8
44
1.70
38106--38174
35
1.9
36
88
2
104
59
8
10
21
1.57
44539--44655
63
1.9
61
92
3
198
38
5
10
46
1.60
44942--44984
15
2.9
14
83
10
50
41
2
0
55
1.12
44936--44984
21
2.5
21
87
9
68
38
4
0
57
1.18
50952--51146
31
6.3
31
78
4
162
33
23
22
21
1.97
52813--52846
2
17.0
2
100
0
68
50
0
0
50
1.00
53801--53884
13
6.2
13
75
15
64
28
0
13
58
1.35
53805--53884
42
1.9
42
94
0
142
30
0
12
57
1.36
54115--54145
10
3.1
10
95
0
53
35
9
25
29
1.88
64005--64033
12
2.3
13
94
5
51
58
0
0
41
0.98
64006--64035
15
2.0
15
100
0
60
60
0
0
40
0.97

Tables:   1

The End!