Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001827.1 Corchorus olitorius cultivar O-4 contig01827, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 627

Length: 1045
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.32


Found at i:821 original size:26 final size:26

Alignment explanation


    Indices: 785--835  Score: 102
    Period size: 26  Copynumber: 2.0  Consensus size: 26

        775 TTCTGCCGTT

                                      
        785 CCGGTGGATGATTTTGCCTTTGAAAA
          1 CCGGTGGATGATTTTGCCTTTGAAAA

                                     
        811 CCGGTGGATGATTTTGCCTTTGAAA
          1 CCGGTGGATGATTTTGCCTTTGAAA

        836 TATCTTGACA


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   25  1.00

ACGTcount: A:0.22, C:0.16, G:0.27, T:0.35


Consensus pattern (26 bp):   
CCGGTGGATGATTTTGCCTTTGAAAA
Done.