Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018277.1 Corchorus olitorius cultivar O-4 contig18310, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4886

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
269--1474
618
2.0
618
98
0
2358
32
16
13
37
1.87
1455--1492
18
2.1
18
100
0
76
57
5
15
21
1.57
2144--2179
18
2.0
19
89
10
58
22
8
25
44
1.80
2216--2253
19
2.0
20
89
5
60
31
0
18
50
1.47
2398--2472
29
2.5
29
80
8
89
46
10
17
25
1.80
2602--2708
29
3.6
29
87
2
133
31
15
9
42
1.79
2629--2740
60
1.9
59
85
3
154
29
16
13
40
1.87
2656--2741
29
2.8
31
84
5
113
26
17
15
40
1.89
3699--3835
31
4.5
31
79
5
127
40
13
14
31
1.85
3964--4030
31
2.2
31
92
5
111
20
17
11
49
1.79
4488--4738
124
2.0
124
90
1
396
29
17
16
35
1.93

Tables:   1

The End!