Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018279.1 Corchorus olitorius cultivar O-4 contig18312, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 741

Length: 1236
ACGTcount: A:0.25, C:0.16, G:0.19, T:0.40


Found at i:6 original size:1 final size:1

Alignment explanation


    Indices: 1--25  Score: 50
    Period size: 1  Copynumber: 25.0  Consensus size: 1

                                     
          1 TTTTTTTTTTTTTTTTTTTTTTTTT
          1 TTTTTTTTTTTTTTTTTTTTTTTTT

         26 CCCAGATAGA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   1   24  1.00

ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00


Consensus pattern (1 bp):   
T

Found at i:1206 original size:2 final size:2

Alignment explanation


    Indices: 1201--1233  Score: 66
    Period size: 2  Copynumber: 16.5  Consensus size: 2

       1191 TTTTTTTTCT

                                                             
       1201 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

       1234 GCG


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   31  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA

Done.