Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018282.1 Corchorus olitorius cultivar O-4 contig18315, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47381

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9--1836
332
5.5
324
76
11
1013
32
13
16
37
1.87
6665--6703
17
2.3
17
100
0
78
35
17
17
28
1.94
8500--8587
43
2.0
43
100
0
176
48
14
18
18
1.81
12271--12308
19
2.0
19
94
0
67
39
15
13
31
1.86
14363--14421
25
2.4
25
91
2
93
37
10
3
49
1.54
16245--16291
19
2.4
20
89
3
69
42
17
0
40
1.49
18064--18109
19
2.4
19
81
3
56
41
17
2
39
1.62
25140--25209
17
3.8
18
75
22
65
31
4
0
64
1.13
27434--27721
22
13.0
21
72
14
147
41
9
14
34
1.79
27421--28074
44
14.8
44
71
12
179
38
11
17
32
1.86
27465--28074
22
27.6
22
69
12
160
38
11
17
32
1.86
27847--28075
43
5.3
43
81
8
223
37
13
18
29
1.90
27752--28075
65
5.0
66
72
10
213
36
13
18
31
1.90
27843--28075
22
10.7
22
77
5
188
38
14
18
28
1.90
30420--30585
22
7.5
22
77
5
165
31
13
15
39
1.86
30420--30586
66
2.5
65
83
6
192
31
13
14
39
1.86
41684--41753
29
2.3
31
87
4
99
34
21
11
32
1.89

Tables:   1

The End!