genome.fa.s18284.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018284.1 Corchorus olitorius cultivar O-4 contig18317, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  190247

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
994--1048	26	2.1	26	100	0	110	30	7	23	38	1.82
1421--1911	37	13.4	37	76	7	421	24	16	15	43	1.86
1394--1921	74	7.2	74	82	6	590	24	17	14	43	1.86
1423--1851	142	3.0	143	81	6	463	24	16	15	43	1.86
1410--1911	179	2.8	179	78	7	472	24	16	15	44	1.86
2165--2242	33	2.4	33	91	0	120	43	17	6	32	1.75
2399--2768	7	51.9	7	94	4	490	57	22	0	19	1.43
2755--2823	27	2.6	27	86	4	86	39	15	7	37	1.76
6802--8114	315	4.2	311	77	10	1132	35	17	15	32	1.91
8559--10147	328	4.9	323	77	10	1306	34	15	14	34	1.88
9878--10428	281	2.0	282	82	3	689	34	16	14	34	1.89
10154--11010	332	2.6	324	80	4	913	35	15	12	35	1.86
11373--11410	15	2.4	16	86	8	51	55	2	2	39	1.28
11515--11556	21	2.0	21	86	4	59	61	7	9	21	1.50
14503--14543	1	41.0	1	100	0	82	100	0	0	0	0.00
14976--15015	18	2.3	18	86	4	55	45	0	2	52	1.14
22628--22661	5	6.8	5	100	0	68	20	20	0	58	1.39
22726--22786	27	2.2	28	83	11	74	44	9	0	45	1.37
29521--33335	329	11.5	327	76	8	3075	33	14	14	37	1.87
29521--33338	660	5.7	661	80	7	3516	33	14	14	37	1.87
33785--33823	2	19.5	2	94	0	69	48	2	0	48	1.15
33832--34262	216	2.0	215	97	0	817	28	14	15	42	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35652--35685	16	2.1	16	100	0	68	41	0	0	58	0.98
39276--39326	19	2.7	19	96	0	93	15	23	0	60	1.35
39276--39332	19	2.9	19	87	7	80	14	22	1	61	1.42
40301--40358	30	2.0	29	93	3	98	55	13	15	15	1.70
40310--40486	92	1.9	93	93	3	304	50	14	9	25	1.73
45946--46000	30	1.9	29	82	10	69	45	7	3	43	1.49
45954--46043	43	2.0	43	89	6	135	43	7	5	43	1.56
46853--46900	22	2.2	22	79	13	55	52	2	16	29	1.56
46854--46899	21	2.2	21	84	7	58	50	2	17	30	1.58
50260--50293	17	1.9	18	88	5	52	58	20	5	14	1.57
50986--51015	15	2.1	14	93	6	51	33	0	0	66	0.92
52069--52572	250	2.0	253	92	1	843	27	20	16	35	1.94
53759--53788	15	2.1	15	93	6	53	66	0	0	33	0.92
71180--71221	17	2.3	18	80	12	50	21	30	9	38	1.85
71190--71227	17	2.2	17	95	0	67	18	31	10	39	1.85
74987--75275	148	1.9	150	95	1	519	43	16	7	31	1.76
75454--75520	34	2.0	34	93	0	116	26	19	11	41	1.86
75461--75520	20	3.3	20	64	33	53	28	21	11	38	1.89
87783--88006	112	2.0	112	92	0	376	32	25	18	24	1.97
103893--103938	18	2.6	18	100	0	92	23	10	8	56	1.61
105411--105538	66	2.0	65	85	4	177	21	8	25	45	1.80
106066--106103	19	2.0	20	89	5	60	10	21	5	63	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108061--108111	10	5.1	10	100	0	102	19	29	21	29	1.98
114827--114852	9	2.9	9	100	0	52	88	0	0	11	0.52
116559--116636	38	2.1	38	97	0	147	42	21	12	23	1.87
120685--120713	2	14.5	2	100	0	58	48	0	51	0	1.00
133861--134017	83	1.9	79	87	5	224	31	5	23	40	1.76
147539--147570	15	2.1	15	100	0	64	50	15	25	9	1.74
149611--149693	40	2.1	40	100	0	166	24	14	14	46	1.81
149947--149976	15	2.0	15	100	0	60	40	6	13	40	1.71
150658--150682	3	8.3	3	100	0	50	68	0	32	0	0.90
166447--166484	3	12.7	3	94	0	67	34	0	0	65	0.93
185342--185381	20	2.0	21	90	5	64	0	32	2	65	1.06
186045--186218	90	2.0	88	89	4	269	33	9	6	49	1.63
186281--186319	20	2.0	20	90	10	62	35	7	10	46	1.67
187819--187855	19	2.0	19	89	5	58	64	0	0	35	0.94
188567--188674	40	2.7	39	68	19	96	38	7	11	42	1.68
188752--189214	164	2.8	165	91	2	750	35	10	9	43	1.73
189246--189606	142	2.6	142	86	1	494	33	10	10	45	1.73
189448--189778	172	1.9	172	88	3	497	35	11	8	45	1.71

Tables:   1

The End!