Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018286.1 Corchorus olitorius cultivar O-4 contig18319, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41166

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3257--3330
36
2.1
36
100
0
148
51
16
16
16
1.77
8959--8998
21
1.9
21
94
0
71
32
12
7
47
1.69
9242--9292
14
3.6
14
73
19
52
47
9
5
37
1.61
10407--10447
15
2.7
16
88
7
59
0
26
0
73
0.84
11388--11442
29
1.9
28
85
3
74
23
20
9
47
1.78
11601--11658
28
2.0
30
86
6
84
43
12
20
24
1.86
13385--13453
31
2.3
31
84
2
86
27
14
27
30
1.95
13458--13498
21
2.0
20
85
4
55
58
2
0
39
1.11
13936--13990
25
2.2
26
78
18
64
54
1
0
43
1.10
19968--20000
3
11.0
3
100
0
66
0
33
0
66
0.92
31011--31215
106
1.9
106
98
0
401
41
20
11
26
1.86
31391--31478
45
2.0
44
89
6
135
38
22
5
32
1.78

Tables:   1

The End!