Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018288.1 Corchorus olitorius cultivar O-4 contig18321, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32893

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4964--5294
179
1.9
178
87
4
497
35
13
15
35
1.87
15356--15419
32
2.0
32
84
6
85
10
31
34
23
1.89
15468--15509
14
3.0
14
89
0
57
54
0
0
45
0.99
17517--17590
29
2.5
29
80
2
85
18
24
18
37
1.94
17724--17779
29
1.9
29
85
7
78
37
14
30
17
1.90
18426--18539
56
2.0
56
94
0
201
34
24
0
40
1.62
18613--18679
21
3.2
21
64
16
57
28
5
14
50
1.66
18612--18692
42
1.9
42
97
0
153
29
7
16
46
1.73
21280--21306
11
2.5
11
100
0
54
62
14
0
22
1.31
22492--22567
30
2.5
30
93
0
125
35
11
11
40
1.79
23558--23649
42
2.2
43
98
2
177
50
2
35
11
1.52
24806--25180
189
2.0
189
98
0
732
38
13
10
37
1.78
27962--27995
7
4.9
7
89
10
52
88
11
0
0
0.52
27957--27994
8
5.0
8
84
12
53
86
13
0
0
0.56
27957--27994
15
2.5
15
91
0
58
86
13
0
0
0.56
29037--29088
5
9.8
5
78
19
52
40
13
1
44
1.55
29041--29088
21
2.2
21
85
10
62
39
14
2
43
1.57
29548--29572
10
2.5
10
100
0
50
80
8
12
0
0.92
29648--29687
2
20.5
2
94
5
73
50
0
0
50
1.00
29843--29886
21
2.1
21
86
0
61
13
40
9
36
1.76
29852--29892
21
2.0
21
90
4
66
12
43
7
36
1.70
30333--30385
15
3.3
15
73
14
52
28
3
9
58
1.47

Tables:   1

The End!