Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018289.1 Corchorus olitorius cultivar O-4 contig18322, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 760

Length: 1268
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31


Found at i:383 original size:9 final size:9

Alignment explanation


    Indices: 369--398  Score: 51
    Period size: 9  Copynumber: 3.2  Consensus size: 9

        359 AAAATTTGAA

                     
        369 AATTTGAGG
          1 AATTTGAGG

                     
        378 AATTTGAGG
          1 AATTTGAGG

                      
        387 AATTTGATGG
          1 AATTTGA-GG

              
        397 AA
          1 AA

        399 AAGGTGTTGG


Statistics
Matches: 20,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
   9   16  0.80
  10    4  0.20

ACGTcount: A:0.37, C:0.00, G:0.30, T:0.33


Consensus pattern (9 bp):   
AATTTGAGG
Done.