Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018291.1 Corchorus olitorius cultivar O-4 contig18324, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54293

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53--97
21
2.1
21
87
0
63
15
22
31
31
1.95
1274--1338
29
2.2
29
97
2
121
20
6
29
44
1.75
2355--2432
29
2.8
29
80
3
88
37
24
16
21
1.94
4717--4780
21
3.1
21
93
2
112
28
26
14
31
1.95
22718--22955
128
1.9
128
97
0
449
27
18
10
43
1.83
22938--22994
22
2.5
23
83
11
64
12
8
3
75
1.16
24347--24378
2
16.0
2
100
0
64
50
0
0
50
1.00
27251--27313
27
2.3
26
81
7
72
34
20
14
30
1.92
28355--28409
13
4.4
13
78
15
53
32
1
5
60
1.30
33160--33184
2
12.5
2
100
0
50
0
52
0
48
1.00
33799--33861
27
2.3
26
81
7
72
36
20
12
30
1.90
34901--34955
13
4.4
13
78
15
53
32
1
5
60
1.30
37296--37397
42
2.4
43
83
8
127
32
9
21
36
1.86
37309--37648
22
15.4
22
66
14
87
37
8
17
36
1.81
37362--37543
65
2.7
68
78
5
183
37
8
19
34
1.83
37711--37753
22
2.0
22
85
0
59
41
11
18
27
1.85
37789--37851
23
2.7
24
85
4
76
38
9
12
39
1.76
37811--37875
23
2.8
24
84
11
75
33
10
15
40
1.82
37789--37875
23
3.8
23
77
15
74
35
10
14
39
1.81
37843--37892
22
2.3
22
85
0
64
34
12
14
40
1.82
38113--38171
21
2.8
21
97
2
109
40
6
13
38
1.71
39979--40237
132
2.0
132
89
1
394
27
14
16
41
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45498--45543
24
1.9
24
82
8
58
28
26
23
21
1.99
49825--49929
49
2.1
49
96
0
192
19
15
14
51
1.76
52899--52934
2
18.5
2
94
5
65
47
0
0
52
1.00

Tables:   1

The End!