Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018293.1 Corchorus olitorius cultivar O-4 contig18326, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2188
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.39


Found at i:1024 original size:14 final size:16

Alignment explanation


    Indices: 1005--1036  Score: 50
    Period size: 14  Copynumber: 2.1  Consensus size: 16

        995 GCTATTGTTG

                            
       1005 ATAGCAA-TAC-TGCA
          1 ATAGCAATTACTTGCA

                            
       1019 ATAGCAATTACTTGCA
          1 ATAGCAATTACTTGCA

              
       1035 AT
          1 AT

       1037 TTTTTCTACA


Statistics
Matches: 16,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  14    7  0.44
  15    3  0.19
  16    6  0.38

ACGTcount: A:0.41, C:0.19, G:0.12, T:0.28


Consensus pattern (16 bp):   
ATAGCAATTACTTGCA
Done.