Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018301.1 Corchorus olitorius cultivar O-4 contig18334, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9196
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29


Found at i:2274 original size:30 final size:30

Alignment explanation


    Indices: 2238--2295  Score: 107
    Period size: 30  Copynumber: 1.9  Consensus size: 30

       2228 TATTTTCCTT

                       *                  
       2238 GCTACGTATTTTTGTTCACAATAAAAATCA
          1 GCTACGTATTTCTGTTCACAATAAAAATCA

                                        
       2268 GCTACGTATTTCTGTTCACAATAAAAAT
          1 GCTACGTATTTCTGTTCACAATAAAAAT

       2296 GCGGCCTAAG


Statistics
Matches: 27,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  30   27  1.00

ACGTcount: A:0.36, C:0.17, G:0.10, T:0.36


Consensus pattern (30 bp):   
GCTACGTATTTCTGTTCACAATAAAAATCA
Done.