Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001831.1 Corchorus olitorius cultivar O-4 contig01831, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1673
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.27


Found at i:1115 original size:17 final size:16

Alignment explanation


    Indices: 1093--1138  Score: 65
    Period size: 17  Copynumber: 2.8  Consensus size: 16

       1083 TAAATATGTG

                             
       1093 ATATAATAATAATATAT
          1 ATATAATAATAAT-TAT

                     *       
       1110 ATATAATATTTAATTAT
          1 ATATAATA-ATAATTAT

                        
       1127 ATATAATAATAA
          1 ATATAATAATAA

       1139 ACGGTCGGTT


Statistics
Matches: 26,  Mismatches: 2, Indels: 3
        0.84            0.06        0.10

Matches are distributed among these distances:
  16    3  0.12
  17   19  0.73
  18    4  0.15

ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43


Consensus pattern (16 bp):   
ATATAATAATAATTAT

Found at i:1128 original size:21 final size:20

Alignment explanation


    Indices: 1099--1137  Score: 60
    Period size: 21  Copynumber: 1.9  Consensus size: 20

       1089 TGTGATATAA

                                 
       1099 TAATAATATATATATAATATT
          1 TAATAATATATA-ATAATATT

                *             
       1120 TAATTATATATAATAATA
          1 TAATAATATATAATAATA

       1138 AACGGTCGGT


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  20    6  0.35
  21   11  0.65

ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46


Consensus pattern (20 bp):   
TAATAATATATAATAATATT
Done.