Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018313.1 Corchorus olitorius cultivar O-4 contig18346, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8977
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.36


Found at i:8181 original size:21 final size:21

Alignment explanation


    Indices: 8135--8182  Score: 53
    Period size: 21  Copynumber: 2.3  Consensus size: 21

       8125 GGAGTATATA

                 *  *            
       8135 TTTATCTTGTTGCTTAATTTT
          1 TTTATTTTCTTGCTTAATTTT

            *                     
       8156 ATTATTTTCTTGCTT-ATTTAT
          1 TTTATTTTCTTGCTTAATTT-T

                  
       8177 TTTATT
          1 TTTATT

       8183 GTTACTCTTT


Statistics
Matches: 22,  Mismatches: 4, Indels: 2
        0.79            0.14        0.07

Matches are distributed among these distances:
  20    4  0.18
  21   18  0.82

ACGTcount: A:0.17, C:0.08, G:0.06, T:0.69


Consensus pattern (21 bp):   
TTTATTTTCTTGCTTAATTTT
Done.