Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018316.1 Corchorus olitorius cultivar O-4 contig18349, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19097

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6450--6476
10
2.7
10
100
0
54
29
0
37
33
1.58
7029--7064
19
1.9
18
88
5
54
33
22
2
41
1.68
12100--12131
14
2.2
15
94
5
57
78
12
3
6
1.06
12243--12304
29
2.1
29
93
0
106
46
17
6
29
1.73
14049--14097
19
2.5
20
80
16
57
32
20
4
42
1.71
15153--15186
10
3.4
10
87
0
50
50
11
0
38
1.39
15534--15662
34
3.9
34
91
4
212
22
27
21
27
1.99
16905--16939
2
17.5
2
100
0
70
51
0
0
48
1.00
17109--17143
4
8.8
4
100
0
70
25
0
22
51
1.48
17044--17204
81
2.0
80
90
7
254
36
5
14
43
1.70
17044--17215
83
2.1
84
91
6
280
36
5
15
43
1.69

Tables:   1

The End!