Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018317.1 Corchorus olitorius cultivar O-4 contig18350, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87837

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
203--247
2
22.5
2
100
0
90
51
0
0
48
1.00
4294--4413
38
3.2
37
74
11
102
55
3
1
39
1.26
4539--4565
14
1.9
14
100
0
54
0
22
40
37
1.54
5374--5403
2
15.0
2
100
0
60
50
0
0
50
1.00
5578--5612
4
8.8
4
100
0
70
25
0
22
51
1.48
5513--5673
81
2.0
80
90
7
254
36
5
14
43
1.70
5513--5684
83
2.1
84
91
6
280
36
5
15
43
1.69
8496--8551
29
2.0
28
89
3
85
39
19
10
30
1.86
10194--10720
284
1.9
284
97
0
1009
31
22
14
32
1.93
10609--10726
51
2.3
51
82
4
159
33
25
14
26
1.94
11376--11404
14
2.1
14
100
0
58
44
0
20
34
1.52
12862--12898
19
2.0
19
94
5
67
67
0
0
32
0.91
15155--15208
27
2.0
27
88
0
81
16
22
27
33
1.95
16293--16354
29
2.1
29
100
0
124
25
3
33
37
1.72
16424--16452
14
2.1
14
100
0
58
41
24
20
13
1.89
23187--23215
2
14.5
2
100
0
58
51
0
48
0
1.00
36905--36937
1
33.0
1
100
0
66
0
0
0
100
0.00
37298--37347
26
1.9
26
92
8
84
36
14
10
40
1.79
37987--38026
20
2.0
20
85
5
53
30
20
25
25
1.99
42608--42633
9
2.9
9
100
0
52
0
11
42
46
1.40
45738--45767
2
15.0
2
100
0
60
50
0
0
50
1.00
45933--45968
9
3.9
9
85
7
54
41
27
0
30
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45934--45970
19
1.9
19
100
0
74
43
29
0
27
1.55
63516--63541
3
8.7
3
100
0
52
34
0
0
65
0.93
67422--67466
21
2.1
21
100
0
90
33
26
13
26
1.93
71737--71811
30
2.5
31
93
4
134
45
2
16
36
1.61
71858--71894
15
2.5
15
95
0
65
29
5
13
51
1.63
73872--73909
10
3.9
10
80
19
53
42
2
0
55
1.14
73877--73938
19
3.1
19
80
13
61
50
1
0
48
1.10
78273--78297
7
3.6
7
100
0
50
44
0
12
44
1.41
86826--86887
24
2.6
24
78
0
70
8
25
37
29
1.85
87137--87791
28
23.4
28
80
3
566
16
27
27
28
1.97
87137--87791
167
3.9
166
85
3
690
16
27
27
28
1.97
87165--87707
195
2.8
195
84
3
608
15
27
28
28
1.96
87530--87837
83
3.7
83
77
4
359
19
25
27
27
1.99
87524--87837
28
11.3
28
75
6
124
18
25
27
28
1.98

Tables:   1

The End!