Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018319.1 Corchorus olitorius cultivar O-4 contig18352, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42593

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1136--1174
20
2.0
20
85
10
53
28
5
2
64
1.28
1340--1572
22
10.5
22
67
10
109
37
10
15
36
1.81
1341--1494
44
3.5
44
76
7
125
38
11
14
35
1.82
1337--1494
66
2.4
66
81
8
196
38
10
15
35
1.82
1581--1739
22
7.0
21
72
14
68
33
9
20
36
1.85
1668--1996
22
14.8
21
71
15
139
39
10
15
34
1.81
1829--2020
44
4.4
43
75
10
167
42
9
13
34
1.78
1830--1996
66
2.5
66
78
2
176
41
9
14
34
1.78
2036--2285
22
11.7
22
68
13
146
40
9
16
33
1.81
2102--2345
22
11.5
22
73
10
170
39
9
17
34
1.81
2302--2355
22
2.4
23
81
6
67
40
3
24
31
1.72
4786--4813
13
2.2
13
100
0
56
92
0
7
0
0.37
24200--24253
28
1.9
28
85
7
74
68
3
0
27
1.06
24205--24260
23
2.4
23
87
0
76
66
5
0
28
1.14
24768--25009
131
1.9
131
90
2
389
47
2
11
39
1.52
25949--26282
165
2.0
163
94
3
578
35
11
12
39
1.81
28476--28503
13
2.2
13
100
0
56
0
46
14
39
1.44
30918--31222
157
1.9
157
81
7
361
30
15
15
38
1.89

Tables:   1

The End!