Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001832.1 Corchorus olitorius cultivar O-4 contig01832, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1678
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.35


Found at i:1166 original size:33 final size:33

Alignment explanation


    Indices: 1105--1167  Score: 81
    Period size: 33  Copynumber: 1.9  Consensus size: 33

       1095 TGAACCTGTC

                                 **          
       1105 TGAACCTGAAAAAACCAGAATTTAAAAAAAAAT
          1 TGAACCTGAAAAAACCAGAATCCAAAAAAAAAT

                 *          *      *      
       1138 TGAACTTGAAAAAACCCGAATCCGAAAAAA
          1 TGAACCTGAAAAAACCAGAATCCAAAAAAA

       1168 GTGTGAACCC


Statistics
Matches: 25,  Mismatches: 5, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  33   25  1.00

ACGTcount: A:0.57, C:0.16, G:0.11, T:0.16


Consensus pattern (33 bp):   
TGAACCTGAAAAAACCAGAATCCAAAAAAAAAT
Done.